miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>45502_miR390:micropc
          Length = 68

 Score =  135 bits (68), Expect = 4e-33
 Identities = 68/68 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aagctcaggagggatagcaccatgaatacatcttaataactatctatagcgctatccatc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aagctcaggagggatagcaccatgaatacatcttaataactatctatagcgctatccatc 60

                  
Query: 61 ttgagttt 68
          ||||||||
Sbjct: 61 ttgagttt 68




>45082_miR390:micropc
          Length = 68

 Score =  135 bits (68), Expect = 4e-33
 Identities = 68/68 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aagctcaggagggatagcaccatgaatacatcttaataactatctatagcgctatccatc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aagctcaggagggatagcaccatgaatacatcttaataactatctatagcgctatccatc 60

                  
Query: 61 ttgagttt 68
          ||||||||
Sbjct: 61 ttgagttt 68




>45612_miR390:micropc
          Length = 88

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcaccatg 24
          ||||||||||||||||||||||||
Sbjct: 1  aagctcaggagggatagcaccatg 24




>44796_miR390:micropc
          Length = 87

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcaccatg 24
          ||||||||||||||||||||||||
Sbjct: 1  aagctcaggagggatagcaccatg 24




>46582_miR390:micropc
          Length = 72

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcaccatg 24
          |||||||||||||||||| |||||
Sbjct: 1  aagctcaggagggatagcgccatg 24




>46562_miR390:micropc
          Length = 96

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcaccatg 24
          |||||||||||||||||| |||||
Sbjct: 1  aagctcaggagggatagcgccatg 24



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 45 tatagcgctatccatcttgagttt 68
          |||||||||||||||| |||||||
Sbjct: 73 tatagcgctatccatcctgagttt 96




>46339_miR390:micropc
          Length = 71

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcaccatg 24
          |||||||||||||||||| |||||
Sbjct: 1  aagctcaggagggatagcgccatg 24




>46099_miR390:micropc
          Length = 97

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcaccatg 24
          |||||||||||||||||| |||||
Sbjct: 1  aagctcaggagggatagcgccatg 24




>45789_miR390:micropc
          Length = 97

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcaccatg 24
          |||||||||||||||||| |||||
Sbjct: 1  aagctcaggagggatagcgccatg 24




>45779_miR390:micropc
          Length = 96

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcaccatg 24
          |||||||||||||||||| |||||
Sbjct: 1  aagctcaggagggatagcgccatg 24



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 45 tatagcgctatccatcttgagttt 68
          |||||||||||||||| |||||||
Sbjct: 73 tatagcgctatccatcctgagttt 96




>45682_miR390:micropc
          Length = 71

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcaccatg 24
          |||||||||||||||||| |||||
Sbjct: 1  aagctcaggagggatagcgccatg 24




>45362_miR390:micropc
          Length = 97

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcaccatg 24
          |||||||||||||||||| |||||
Sbjct: 1  aagctcaggagggatagcgccatg 24



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 45 tatagcgctatccatcttgagttt 68
          |||||||||||||||| |||||||
Sbjct: 73 tatagcgctatccatcctgagttt 96




>45123_miR390:micropc
          Length = 72

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcaccatg 24
          |||||||||||||||||| |||||
Sbjct: 1  aagctcaggagggatagcgccatg 24




>44966_miR390:micropc
          Length = 98

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcaccatg 24
          |||||||||||||||||| |||||
Sbjct: 1  aagctcaggagggatagcgccatg 24




>46796_miR390:micropc
          Length = 95

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 2  agctcaggagggatagcaccatg 24
          ||||||||||||||||| |||||
Sbjct: 1  agctcaggagggatagcgccatg 23




>45647_miR390:micropc
          Length = 94

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 2  agctcaggagggatagcaccatg 24
          ||||||||||||||||| |||||
Sbjct: 1  agctcaggagggatagcgccatg 23



 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 45 tatagcgctatccatcttgagtt 67
          |||||||||||||||| ||||||
Sbjct: 72 tatagcgctatccatcctgagtt 94




>45151_miR390:micropc
          Length = 69

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 2  agctcaggagggatagcaccatg 24
          ||||||||||||||||| |||||
Sbjct: 1  agctcaggagggatagcgccatg 23