miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>46200_miR403:micropc
          Length = 125

 Score =  248 bits (125), Expect = 8e-67
 Identities = 125/125 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcaccagtaagtaatcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcaccagtaagtaatcata 60

                                                                       
Query: 61  ctttttctttgtctgtttgttgccagacaggatctgttggttcgttagattcacgcacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctttttctttgtctgtttgttgccagacaggatctgttggttcgttagattcacgcacaa 120

                
Query: 121 actcg 125
           |||||
Sbjct: 121 actcg 125




>45766_miR403:micropc
          Length = 125

 Score =  248 bits (125), Expect = 8e-67
 Identities = 125/125 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcaccagtaagtaatcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcaccagtaagtaatcata 60

                                                                       
Query: 61  ctttttctttgtctgtttgttgccagacaggatctgttggttcgttagattcacgcacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctttttctttgtctgtttgttgccagacaggatctgttggttcgttagattcacgcacaa 120

                
Query: 121 actcg 125
           |||||
Sbjct: 121 actcg 125




>45615_miR403:micropc
          Length = 125

 Score =  248 bits (125), Expect = 8e-67
 Identities = 125/125 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcaccagtaagtaatcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcaccagtaagtaatcata 60

                                                                       
Query: 61  ctttttctttgtctgtttgttgccagacaggatctgttggttcgttagattcacgcacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctttttctttgtctgtttgttgccagacaggatctgttggttcgttagattcacgcacaa 120

                
Query: 121 actcg 125
           |||||
Sbjct: 121 actcg 125




>46843_miR403:micropc
          Length = 117

 Score =  165 bits (83), Expect = 1e-41
 Identities = 115/125 (92%), Gaps = 8/125 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcaccagtaagtaatcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||
Sbjct: 1   cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcacc----agtaatcata 56

                                                                       
Query: 61  ctttttctttgtctgtttgttgccagacaggatctgttggttcgttagattcacgcacaa 120
           |||||| ||||||    ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 57  ctttttgtttgtc----tgttgccagtcaggatctgttggttcgttagattcacgcacaa 112

                
Query: 121 actcg 125
           |||||
Sbjct: 113 actcg 117




>45948_miR403:micropc
          Length = 117

 Score =  165 bits (83), Expect = 1e-41
 Identities = 115/125 (92%), Gaps = 8/125 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcaccagtaagtaatcata 60
           ||||||||||||||||||||||||||||||||||||||| |||||||||||    |||||
Sbjct: 1   cgtgtttgtgcgtgaatctaaggatccttaatcttatcaaatcaccagtaa----tcata 56

                                                                       
Query: 61  ctttttctttgtctgtttgttgccagacaggatctgttggttcgttagattcacgcacaa 120
           |||||| |||||    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  ctttttgtttgt----ttgttgccagacaggatctgttggttcgttagattcacgcacaa 112

                
Query: 121 actcg 125
           |||||
Sbjct: 113 actcg 117




>46397_miR403:micropc
          Length = 117

 Score =  157 bits (79), Expect = 2e-39
 Identities = 114/125 (91%), Gaps = 8/125 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcaccagtaagtaatcata 60
           ||||||||||||||||||||||||||||||||||||||| |||||||||||    |||||
Sbjct: 1   cgtgtttgtgcgtgaatctaaggatccttaatcttatcaaatcaccagtaa----tcata 56

                                                                       
Query: 61  ctttttctttgtctgtttgttgccagacaggatctgttggttcgttagattcacgcacaa 120
           |||||| ||||| |||||    ||||||||||||||||||||||||||||||||||||||
Sbjct: 57  ctttttgtttgtttgttt----ccagacaggatctgttggttcgttagattcacgcacaa 112

                
Query: 121 actcg 125
           |||||
Sbjct: 113 actcg 117




>45432_miR403:micropc
          Length = 109

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 104 gttagattcacgcacaaactcg 125
           ||||||||||||||||||||||
Sbjct: 88  gttagattcacgcacaaactcg 109




>45272_miR403:micropc
          Length = 73

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 106 tagattcacgcacaaactcg 125
           ||||||||||||||||||||
Sbjct: 54  tagattcacgcacaaactcg 73