miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>45901_miR162:micropc
          Length = 111

 Score =  216 bits (109), Expect = 3e-57
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggattcagcggttcatcgatctgttccataatcctaatgattgaatttcatacgacgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   tggattcagcggttcatcgatctgttccataatcctaatgattgaatttcatacgacgat 61

                                                            
Query: 61  tgagagagagatacgggaaaaggaatcgatcgataaacctctgcatcca 109
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  tgagagagagatacgggaaaaggaatcgatcgataaacctctgcatcca 110




>45991_miR162:micropc
          Length = 108

 Score =  137 bits (69), Expect = 2e-33
 Identities = 101/110 (91%), Gaps = 5/110 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggattcagcggttcatcgatctgttccataatcctaatgattgaat-ttcatacgacga 59
           ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 2   tggattcagcggttcatcgatctgttccataatcctaatgattaaatgttcatacgacga 61

                                                             
Query: 60  ttgagagagagatacgggaaaaggaatcgatcgataaacctctgcatcca 109
           |||||||||      |||||| ||||||||||||||||||||||||||||
Sbjct: 62  ttgagagaggt----gggaaatggaatcgatcgataaacctctgcatcca 107




>44845_miR162:micropc
          Length = 106

 Score =  137 bits (69), Expect = 2e-33
 Identities = 101/110 (91%), Gaps = 5/110 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggattcagcggttcatcgatctgttccataatcctaatgattgaat-ttcatacgacga 59
           ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 1   tggattcagcggttcatcgatctgttccataatcctaatgattaaatgttcatacgacga 60

                                                             
Query: 60  ttgagagagagatacgggaaaaggaatcgatcgataaacctctgcatcca 109
           |||||||||      |||||| ||||||||||||||||||||||||||||
Sbjct: 61  ttgagagaggt----gggaaatggaatcgatcgataaacctctgcatcca 106




>46090_miR162:micropc
          Length = 97

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 81  aggaatcgatcgataaacctctgcatcca 109
           |||||||||||||||||||||||||||||
Sbjct: 69  aggaatcgatcgataaacctctgcatcca 97




>45749_miR162:micropc
          Length = 99

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 81  aggaatcgatcgataaacctctgcatcca 109
           |||||||||||||||||||||||||||||
Sbjct: 70  aggaatcgatcgataaacctctgcatcca 98




>46470_miR162:micropc
          Length = 135

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                          
Query: 1  tggattcagcggttcatcgatctgttccataatcctaatgattgaatt 48
          ||||| |||||||||||||||||||||| ||| ||| |||| ||||||
Sbjct: 1  tggatgcagcggttcatcgatctgttccctaagcctgatgaatgaatt 48



 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 78  aaaaggaatcgatcgataaacctctgcatcca 109
           ||||||||||| ||||||||||||||||||||
Sbjct: 104 aaaaggaatcggtcgataaacctctgcatcca 135




>45868_miR162:micropc
          Length = 135

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                          
Query: 1  tggattcagcggttcatcgatctgttccataatcctaatgattgaatt 48
          ||||| |||||||||||||||||||||| ||| ||| |||| ||||||
Sbjct: 1  tggatgcagcggttcatcgatctgttccctaagcctgatgaatgaatt 48



 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 78  aaaaggaatcgatcgataaacctctgcatcca 109
           ||||||||||| ||||||||||||||||||||
Sbjct: 104 aaaaggaatcggtcgataaacctctgcatcca 135




>45605_miR162:micropc
          Length = 135

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                          
Query: 1  tggattcagcggttcatcgatctgttccataatcctaatgattgaatt 48
          ||||| |||||||||||||||||||||| ||| ||| |||| ||||||
Sbjct: 1  tggatgcagcggttcatcgatctgttccctaagcctgatgaatgaatt 48



 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 78  aaaaggaatcgatcgataaacctctgcatcca 109
           ||||||||||| ||||||||||||||||||||
Sbjct: 104 aaaaggaatcggtcgataaacctctgcatcca 135




>45416_miR162:micropc
          Length = 139

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 78  aaaaggaatcgatcgataaacctctgcatcca 109
           ||||||||||| ||||||||||||||||||||
Sbjct: 108 aaaaggaatcggtcgataaacctctgcatcca 139



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 1  tggattcagcggttcatcgatctgttcc 28
          ||||| ||||||||||||||||||||||
Sbjct: 1  tggatgcagcggttcatcgatctgttcc 28




>45197_miR162:micropc
          Length = 139

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 78  aaaaggaatcgatcgataaacctctgcatcca 109
           ||||||||||| ||||||||||||||||||||
Sbjct: 108 aaaaggaatcggtcgataaacctctgcatcca 139



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 1  tggattcagcggttcatcgatctgttcc 28
          ||||| ||||||||||||||||||||||
Sbjct: 1  tggatgcagcggttcatcgatctgttcc 28




>44890_miR162:micropc
          Length = 141

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 78  aaaaggaatcgatcgataaacctctgcatcca 109
           ||||||||||| ||||||||||||||||||||
Sbjct: 109 aaaaggaatcggtcgataaacctctgcatcca 140



 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                    
Query: 1  tggattcagcggttcatcgatctgttccataatcctaatgat 42
          ||||| |||||||||||||||||||||| ||| ||| |||||
Sbjct: 2  tggatgcagcggttcatcgatctgttccctaagcctgatgat 43




>44807_miR162:micropc
          Length = 141

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 78  aaaaggaatcgatcgataaacctctgcatcca 109
           ||||||||||| ||||||||||||||||||||
Sbjct: 109 aaaaggaatcggtcgataaacctctgcatcca 140



 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                    
Query: 1  tggattcagcggttcatcgatctgttccataatcctaatgat 42
          ||||| |||||||||||||||||||||| ||| ||| |||||
Sbjct: 2  tggatgcagcggttcatcgatctgttccctaagcctgatgat 43




>46817_miR162:micropc
          Length = 93

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgatcgataaacctctgcatcca 109
           |||||||||||||||||||||||||||
Sbjct: 66  gaatcgatcgataaacctctgcatcca 92




>46676_miR162:micropc
          Length = 97

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgatcgataaacctctgcatcca 109
           |||||||||||||||||||||||||||
Sbjct: 70  gaatcgatcgataaacctctgcatcca 96




>46628_miR162:micropc
          Length = 136

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                         
Query: 1  tggattcagcggttcatcgatctgttccataatcctaatgattgaat 47
          ||||| |||||||||||||||||||||| ||| ||| |||| |||||
Sbjct: 2  tggatgcagcggttcatcgatctgttccctaagcctgatgaatgaat 48



 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 80  aaggaatcgatcgataaacctctgcatcca 109
           ||||||||| ||||||||||||||||||||
Sbjct: 106 aaggaatcggtcgataaacctctgcatcca 135




>46597_miR162:micropc
          Length = 91

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgatcgataaacctctgcatcca 109
           |||||||||||||||||||||||||||
Sbjct: 65  gaatcgatcgataaacctctgcatcca 91




>46549_miR162:micropc
          Length = 92

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgatcgataaacctctgcatcca 109
           |||||||||||||||||||||||||||
Sbjct: 65  gaatcgatcgataaacctctgcatcca 91




>46511_miR162:micropc
          Length = 89

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgatcgataaacctctgcatcca 109
           |||||||||||||||||||||||||||
Sbjct: 63  gaatcgatcgataaacctctgcatcca 89




>46504_miR162:micropc
          Length = 90

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgatcgataaacctctgcatcca 109
           |||||||||||||||||||||||||||
Sbjct: 64  gaatcgatcgataaacctctgcatcca 90




>46394_miR162:micropc
          Length = 95

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgatcgataaacctctgcatcca 109
           |||||||||||||||||||||||||||
Sbjct: 69  gaatcgatcgataaacctctgcatcca 95




>46364_miR162:micropc
          Length = 95

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgatcgataaacctctgcatcca 109
           |||||||||||||||||||||||||||
Sbjct: 69  gaatcgatcgataaacctctgcatcca 95




>46169_miR162:micropc
          Length = 136

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                         
Query: 1  tggattcagcggttcatcgatctgttccataatcctaatgattgaat 47
          ||||| |||||||||||||||||||||| ||| ||| |||| |||||
Sbjct: 2  tggatgcagcggttcatcgatctgttccctaagcctgatgaatgaat 48



 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 80  aaggaatcgatcgataaacctctgcatcca 109
           ||||||||| ||||||||||||||||||||
Sbjct: 106 aaggaatcggtcgataaacctctgcatcca 135




>46039_miR162:micropc
          Length = 92

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgatcgataaacctctgcatcca 109
           |||||||||||||||||||||||||||
Sbjct: 65  gaatcgatcgataaacctctgcatcca 91




>45903_miR162:micropc
          Length = 90

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgatcgataaacctctgcatcca 109
           |||||||||||||||||||||||||||
Sbjct: 64  gaatcgatcgataaacctctgcatcca 90




>45545_miR162:micropc
          Length = 91

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgatcgataaacctctgcatcca 109
           |||||||||||||||||||||||||||
Sbjct: 64  gaatcgatcgataaacctctgcatcca 90




>45084_miR162:micropc
          Length = 136

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                         
Query: 1  tggattcagcggttcatcgatctgttccataatcctaatgattgaat 47
          ||||| |||||||||||||||||||||| ||| ||| |||| |||||
Sbjct: 2  tggatgcagcggttcatcgatctgttccctaagcctgatgaatgaat 48



 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 80  aaggaatcgatcgataaacctctgcatcca 109
           ||||||||| ||||||||||||||||||||
Sbjct: 106 aaggaatcggtcgataaacctctgcatcca 135




>44934_miR162:micropc
          Length = 97

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgatcgataaacctctgcatcca 109
           |||||||||||||||||||||||||||
Sbjct: 70  gaatcgatcgataaacctctgcatcca 96




>45338_miR162:micropc
          Length = 112

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 81  aggaatcgatcgataaacctctgcatcca 109
           |||||||||||||||| ||||||||||||
Sbjct: 84  aggaatcgatcgataagcctctgcatcca 112




>45279_miR162:micropc
          Length = 114

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 81  aggaatcgatcgataaacctctgcatcca 109
           |||||||||||||||| ||||||||||||
Sbjct: 85  aggaatcgatcgataagcctctgcatcca 113




>46557_miR162:micropc
          Length = 85

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 1  tggattcagcggttcatcgatctgttcc 28
          ||||| ||||||||||||||||||||||
Sbjct: 1  tggatgcagcggttcatcgatctgttcc 28



 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgatcgataaacctctgcatcca 109
           |||||| ||||||||||||||||||||
Sbjct: 59  gaatcggtcgataaacctctgcatcca 85




>46026_miR162:micropc
          Length = 87

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 1  tggattcagcggttcatcgatctgttcc 28
          ||||| ||||||||||||||||||||||
Sbjct: 2  tggatgcagcggttcatcgatctgttcc 29



 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgatcgataaacctctgcatcca 109
           |||||| ||||||||||||||||||||
Sbjct: 60  gaatcggtcgataaacctctgcatcca 86




>46792_miR162:micropc
          Length = 83

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgatcgataaacctctgcatcca 109
           |||||| ||||||||||||||||||||
Sbjct: 57  gaatcggtcgataaacctctgcatcca 83



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 1  tggattcagcggttcatcgatctgttcc 28
          ||||| ||||||||||||||||| ||||
Sbjct: 1  tggatgcagcggttcatcgatctcttcc 28




>46456_miR162:micropc
          Length = 89

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  cgatcgataaacctctgcatcca 109
           |||||||||||||||||||||||
Sbjct: 66  cgatcgataaacctctgcatcca 88




>46096_miR162:micropc
          Length = 87

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgatcgataaacctctgcatcca 109
           |||||| ||||||||||||||||||||
Sbjct: 60  gaatcggtcgataaacctctgcatcca 86




>45757_miR162:micropc
          Length = 86

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgatcgataaacctctgcatcca 109
           |||||| ||||||||||||||||||||
Sbjct: 60  gaatcggtcgataaacctctgcatcca 86



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 7  cagcggttcatcgatctgtt 26
          ||||||||||||||||||||
Sbjct: 7  cagcggttcatcgatctgtt 26




>45617_miR162:micropc
          Length = 88

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgatcgataaacctctgcatcca 109
           |||||| ||||||||||||||||||||
Sbjct: 61  gaatcggtcgataaacctctgcatcca 87



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 7  cagcggttcatcgatctgtt 26
          ||||||||||||||||||||
Sbjct: 8  cagcggttcatcgatctgtt 27




>45283_miR162:micropc
          Length = 87

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  cgatcgataaacctctgcatcca 109
           |||||||||||||||||||||||
Sbjct: 65  cgatcgataaacctctgcatcca 87




>44984_miR162:micropc
          Length = 85

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgatcgataaacctctgcatcca 109
           |||||| ||||||||||||||||||||
Sbjct: 58  gaatcggtcgataaacctctgcatcca 84



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 1  tggattcagcggttcatcgatctgttcc 28
          ||||| ||||||||||||||||| ||||
Sbjct: 2  tggatgcagcggttcatcgatctcttcc 29




>44920_miR162:micropc
          Length = 85

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 83  gaatcgatcgataaacctctgcatcca 109
           |||||| ||||||||||||||||||||
Sbjct: 59  gaatcggtcgataaacctctgcatcca 85




>45921_miR162:micropc
          Length = 110

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 88  gatcgataaacctctgcatcca 109
           ||||||||||||||||||||||
Sbjct: 88  gatcgataaacctctgcatcca 109




>45508_miR162:micropc
          Length = 108

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 88  gatcgataaacctctgcatcca 109
           ||||||||||||||||||||||
Sbjct: 87  gatcgataaacctctgcatcca 108