miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>45222_miR399:micropc
          Length = 102

 Score =  202 bits (102), Expect = 4e-53
 Identities = 102/102 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggcttctctactttggcaacacatgtcaatgatgacgacgacggagaagtcgaacgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agggcttctctactttggcaacacatgtcaatgatgacgacgacggagaagtcgaacgga 60

                                                     
Query: 61  tgccgtccagtcatcgacgacttgccaaaggagagttgccct 102
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgccgtccagtcatcgacgacttgccaaaggagagttgccct 102




>46063_miR399:micropc
          Length = 100

 Score =  198 bits (100), Expect = 5e-52
 Identities = 100/100 (100%)
 Strand = Plus / Plus

                                                                       
Query: 2   gggcttctctactttggcaacacatgtcaatgatgacgacgacggagaagtcgaacggat 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gggcttctctactttggcaacacatgtcaatgatgacgacgacggagaagtcgaacggat 60

                                                   
Query: 62  gccgtccagtcatcgacgacttgccaaaggagagttgccc 101
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gccgtccagtcatcgacgacttgccaaaggagagttgccc 100




>46805_miR399:micropc
          Length = 74

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 81  cttgccaaaggagagttgccct 102
           ||||||||||||||||||||||
Sbjct: 52  cttgccaaaggagagttgccct 73




>46622_miR399:micropc
          Length = 72

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 81  cttgccaaaggagagttgccct 102
           ||||||||||||||||||||||
Sbjct: 51  cttgccaaaggagagttgccct 72




>46373_miR399:micropc
          Length = 74

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 81  cttgccaaaggagagttgccct 102
           ||||||||||||||||||||||
Sbjct: 52  cttgccaaaggagagttgccct 73




>45691_miR399:micropc
          Length = 71

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 81  cttgccaaaggagagttgccct 102
           ||||||||||||||||||||||
Sbjct: 50  cttgccaaaggagagttgccct 71




>45227_miR399:micropc
          Length = 73

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 81  cttgccaaaggagagttgccct 102
           ||||||||||||||||||||||
Sbjct: 51  cttgccaaaggagagttgccct 72




>44886_miR399:micropc
          Length = 73

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 81  cttgccaaaggagagttgccct 102
           ||||||||||||||||||||||
Sbjct: 51  cttgccaaaggagagttgccct 72




>46680_miR399:micropc
          Length = 96

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 82  ttgccaaaggagagttgccct 102
           |||||||||||||||||||||
Sbjct: 76  ttgccaaaggagagttgccct 96




>46506_miR399:micropc
          Length = 108

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 82  ttgccaaaggagagttgccct 102
           |||||||||||||||||||||
Sbjct: 87  ttgccaaaggagagttgccct 107




>46147_miR399:micropc
          Length = 70

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 81  cttgccaaaggagagttgccc 101
           |||||||||||||||||||||
Sbjct: 50  cttgccaaaggagagttgccc 70




>46005_miR399:micropc
          Length = 69

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 81  cttgccaaaggagagttgccc 101
           |||||||||||||||||||||
Sbjct: 49  cttgccaaaggagagttgccc 69




>45985_miR399:micropc
          Length = 96

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 82  ttgccaaaggagagttgccct 102
           |||||||||||||||||||||
Sbjct: 76  ttgccaaaggagagttgccct 96




>44965_miR399:micropc
          Length = 108

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 82  ttgccaaaggagagttgccct 102
           |||||||||||||||||||||
Sbjct: 87  ttgccaaaggagagttgccct 107




>46374_miR399:micropc
          Length = 87

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  tgccaaaggagagttgccct 102
           ||||||||||||||||||||
Sbjct: 68  tgccaaaggagagttgccct 87




>46085_miR399:micropc
          Length = 104

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 82  ttgccaaaggagagttgccc 101
           ||||||||||||||||||||
Sbjct: 85  ttgccaaaggagagttgccc 104




>45225_miR399:micropc
          Length = 104

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 82  ttgccaaaggagagttgccc 101
           ||||||||||||||||||||
Sbjct: 85  ttgccaaaggagagttgccc 104




>45043_miR399:micropc
          Length = 87

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  tgccaaaggagagttgccct 102
           ||||||||||||||||||||
Sbjct: 68  tgccaaaggagagttgccct 87




>44788_miR399:micropc
          Length = 94

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 82  ttgccaaaggagagttgccc 101
           ||||||||||||||||||||
Sbjct: 75  ttgccaaaggagagttgccc 94