miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45519_miR398:micropc
Length = 61
Score = 105 bits (53), Expect = 3e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 1 caggagcgacctgaaatcacatgtgggctgctcggcaacatttgttctcaggtcgcccct 60
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 1 caggagcgacctgaaatcacatgtgggctgcacggcaacatgtgttctcaggtcgcccct 60
Query: 61 g 61
|
Sbjct: 61 g 61
>46304_miR398:micropc
Length = 59
Score = 101 bits (51), Expect = 5e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 2 aggagcgacctgaaatcacatgtgggctgctcggcaacatttgttctcaggtcgcccct 60
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 1 aggagcgacctgaaatcacatgtgggctgcacggcaacatgtgttctcaggtcgcccct 59
>45422_miR398:micropc
Length = 78
Score = 61.9 bits (31), Expect = 4e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 caggagcgacctgaaatcacatgtgggctgc 31
|||||||||||||||||||||||||||||||
Sbjct: 1 caggagcgacctgaaatcacatgtgggctgc 31
Score = 48.1 bits (24), Expect = 7e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ggcaacatttgttctcaggtcgcccctg 61
|||||||| |||||||||||||||||||
Sbjct: 51 ggcaacatgtgttctcaggtcgcccctg 78
>46111_miR398:micropc
Length = 76
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 2 aggagcgacctgaaatcacatgtgggctgc 31
||||||||||||||||||||||||||||||
Sbjct: 1 aggagcgacctgaaatcacatgtgggctgc 30
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 34 ggcaacatttgttctcaggtcgcccct 60
|||||||| ||||||||||||||||||
Sbjct: 50 ggcaacatgtgttctcaggtcgcccct 76
>46116_miR398:micropc
Length = 77
Score = 48.1 bits (24), Expect = 7e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ggcaacatttgttctcaggtcgcccctg 61
|||||||| |||||||||||||||||||
Sbjct: 50 ggcaacatgtgttctcaggtcgcccctg 77
>46303_miR398:micropc
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 34 ggcaacatttgttctcaggtcgcccct 60
|||||||| ||||||||||||||||||
Sbjct: 49 ggcaacatgtgttctcaggtcgcccct 75
>46795_miR398:micropc
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 tgttctcaggtcgcccctg 61
|||||||||||||||||||
Sbjct: 83 tgttctcaggtcgcccctg 101
>46725_miR398:micropc
Length = 67
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 tgttctcaggtcgcccctg 61
|||||||||||||||||||
Sbjct: 49 tgttctcaggtcgcccctg 67
>46604_miR398:micropc
Length = 67
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 tgttctcaggtcgcccctg 61
|||||||||||||||||||
Sbjct: 49 tgttctcaggtcgcccctg 67
>46392_miR398:micropc
Length = 68
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 tgttctcaggtcgcccctg 61
|||||||||||||||||||
Sbjct: 50 tgttctcaggtcgcccctg 68
>46371_miR398:micropc
Length = 77
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 tgttctcaggtcgcccctg 61
|||||||||||||||||||
Sbjct: 59 tgttctcaggtcgcccctg 77
>46367_miR398:micropc
Length = 73
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 tgttctcaggtcgcccctg 61
|||||||||||||||||||
Sbjct: 55 tgttctcaggtcgcccctg 73
>46034_miR398:micropc
Length = 77
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 tgttctcaggtcgcccctg 61
|||||||||||||||||||
Sbjct: 59 tgttctcaggtcgcccctg 77
>45930_miR398:micropc
Length = 63
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 tgttctcaggtcgcccctg 61
|||||||||||||||||||
Sbjct: 45 tgttctcaggtcgcccctg 63
>45294_miR398:micropc
Length = 98
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 tgttctcaggtcgcccctg 61
|||||||||||||||||||
Sbjct: 80 tgttctcaggtcgcccctg 98
>45087_miR398:micropc
Length = 84
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 tgttctcaggtcgcccctg 61
|||||||||||||||||||
Sbjct: 66 tgttctcaggtcgcccctg 84
>44891_miR398:micropc
Length = 89
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 tgttctcaggtcgcccctg 61
|||||||||||||||||||
Sbjct: 71 tgttctcaggtcgcccctg 89
