miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46830_miR157:micropc
Length = 81
Score = 147 bits (74), Expect = 1e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatggatgacttgcaatgaatatgcatctcactcctttgtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cagaagatagagagcacagatggatgacttgcaatgaatatgcatctcactcctttgtgc 64
Query: 61 tctctatgcttctg 74
||||||||||||||
Sbjct: 65 tctctatgcttctg 78
>44822_miR157:micropc
Length = 80
Score = 147 bits (74), Expect = 1e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatggatgacttgcaatgaatatgcatctcactcctttgtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cagaagatagagagcacagatggatgacttgcaatgaatatgcatctcactcctttgtgc 63
Query: 61 tctctatgcttctg 74
||||||||||||||
Sbjct: 64 tctctatgcttctg 77
>46542_miR157:micropc
Length = 82
Score = 125 bits (63), Expect = 4e-30
Identities = 73/75 (97%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatggatgacttgcaat-gaatatgcatctcactcctttgtg 59
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 5 cagaagatagagagcacagatggatgacttgcaatggactatgcatctcactcctttgtg 64
Query: 60 ctctctatgcttctg 74
|||||||||||||||
Sbjct: 65 ctctctatgcttctg 79
>46407_miR156:micropc
Length = 75
Score = 125 bits (63), Expect = 4e-30
Identities = 73/75 (97%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatggatgacttgcaat-gaatatgcatctcactcctttgtg 59
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1 cagaagatagagagcacagatggatgacttgcaatggactatgcatctcactcctttgtg 60
Query: 60 ctctctatgcttctg 74
|||||||||||||||
Sbjct: 61 ctctctatgcttctg 75
>45460_miR157:micropc
Length = 81
Score = 125 bits (63), Expect = 4e-30
Identities = 73/75 (97%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatggatgacttgcaat-gaatatgcatctcactcctttgtg 59
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 4 cagaagatagagagcacagatggatgacttgcaatggactatgcatctcactcctttgtg 63
Query: 60 ctctctatgcttctg 74
|||||||||||||||
Sbjct: 64 ctctctatgcttctg 78
>46821_miR157:micropc
Length = 84
Score = 69.9 bits (35), Expect = 2e-13
Identities = 69/79 (87%), Gaps = 6/79 (7%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatggatgacttgcaat-----gaatatgcatctcactcctt 55
|||||||||||||||||||||| |||| |||||| || | |||||||||||||||
Sbjct: 4 cagaagatagagagcacagatg-atgatgtgcaatttttggattctgcatctcactcctt 62
Query: 56 tgtgctctctatgcttctg 74
|||||||||||||||||||
Sbjct: 63 tgtgctctctatgcttctg 81
>45538_miR157:micropc
Length = 85
Score = 69.9 bits (35), Expect = 2e-13
Identities = 69/79 (87%), Gaps = 6/79 (7%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatggatgacttgcaat-----gaatatgcatctcactcctt 55
|||||||||||||||||||||| |||| |||||| || | |||||||||||||||
Sbjct: 5 cagaagatagagagcacagatg-atgatgtgcaatttttggattctgcatctcactcctt 63
Query: 56 tgtgctctctatgcttctg 74
|||||||||||||||||||
Sbjct: 64 tgtgctctctatgcttctg 82
>45004_miR156:micropc
Length = 78
Score = 69.9 bits (35), Expect = 2e-13
Identities = 69/79 (87%), Gaps = 6/79 (7%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatggatgacttgcaat-----gaatatgcatctcactcctt 55
|||||||||||||||||||||| |||| |||||| || | |||||||||||||||
Sbjct: 1 cagaagatagagagcacagatg-atgatgtgcaatttttggattctgcatctcactcctt 59
Query: 56 tgtgctctctatgcttctg 74
|||||||||||||||||||
Sbjct: 60 tgtgctctctatgcttctg 78
>46718_miR157:micropc
Length = 84
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 tcactcctttgtgctctctatgcttctg 74
||||||||||||||||||||||||||||
Sbjct: 54 tcactcctttgtgctctctatgcttctg 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatg 22
||||||||||||||||||||||
Sbjct: 4 cagaagatagagagcacagatg 25
>46591_miR156:micropc
Length = 78
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 tcactcctttgtgctctctatgcttctg 74
||||||||||||||||||||||||||||
Sbjct: 51 tcactcctttgtgctctctatgcttctg 78
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatg 22
||||||||||||||||||||||
Sbjct: 1 cagaagatagagagcacagatg 22
>45409_miR157:micropc
Length = 85
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 tcactcctttgtgctctctatgcttctg 74
||||||||||||||||||||||||||||
Sbjct: 55 tcactcctttgtgctctctatgcttctg 82
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatg 22
||||||||||||||||||||||
Sbjct: 5 cagaagatagagagcacagatg 26
>45936_miR157:micropc
Length = 91
Score = 54.0 bits (27), Expect = 1e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 40 atgcatctcactcctttgtgctctctatgcttctg 74
||||||| |||||||||||||||| ||||||||||
Sbjct: 54 atgcatcccactcctttgtgctctttatgcttctg 88
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatg 22
||||||||||||||||||||||
Sbjct: 4 cagaagatagagagcacagatg 25
>45840_miR156:micropc
Length = 85
Score = 54.0 bits (27), Expect = 1e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 40 atgcatctcactcctttgtgctctctatgcttctg 74
||||||| |||||||||||||||| ||||||||||
Sbjct: 51 atgcatcccactcctttgtgctctttatgcttctg 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatg 22
||||||||||||||||||||||
Sbjct: 1 cagaagatagagagcacagatg 22
>45457_miR156:micropc
Length = 85
Score = 54.0 bits (27), Expect = 1e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 40 atgcatctcactcctttgtgctctctatgcttctg 74
||||||| |||||||||||||||| ||||||||||
Sbjct: 51 atgcatcccactcctttgtgctctttatgcttctg 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatg 22
||||||||||||||||||||||
Sbjct: 1 cagaagatagagagcacagatg 22
>45172_miR157:micropc
Length = 91
Score = 54.0 bits (27), Expect = 1e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 40 atgcatctcactcctttgtgctctctatgcttctg 74
||||||| |||||||||||||||| ||||||||||
Sbjct: 54 atgcatcccactcctttgtgctctttatgcttctg 88
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatg 22
||||||||||||||||||||||
Sbjct: 4 cagaagatagagagcacagatg 25
>45152_miR157:micropc
Length = 92
Score = 54.0 bits (27), Expect = 1e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 40 atgcatctcactcctttgtgctctctatgcttctg 74
||||||| |||||||||||||||| ||||||||||
Sbjct: 55 atgcatcccactcctttgtgctctttatgcttctg 89
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatg 22
||||||||||||||||||||||
Sbjct: 5 cagaagatagagagcacagatg 26
>44919_miR157:micropc
Length = 92
Score = 54.0 bits (27), Expect = 1e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 40 atgcatctcactcctttgtgctctctatgcttctg 74
||||||| |||||||||||||||| ||||||||||
Sbjct: 55 atgcatcccactcctttgtgctctttatgcttctg 89
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatg 22
||||||||||||||||||||||
Sbjct: 5 cagaagatagagagcacagatg 26
>46109_miR157:micropc
Length = 78
Score = 52.0 bits (26), Expect = 5e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 41 tgcatctcactcctttgtgctctctatgcttctg 74
|||||||||||||||||| |||||||| ||||||
Sbjct: 42 tgcatctcactcctttgtactctctatacttctg 75
>46032_miR156:micropc
Length = 77
Score = 52.0 bits (26), Expect = 5e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 41 tgcatctcactcctttgtgctctctatgcttctg 74
|||||||| |||||||||||||||||| ||||||
Sbjct: 44 tgcatctcgctcctttgtgctctctattcttctg 77
>45887_miR157:micropc
Length = 79
Score = 52.0 bits (26), Expect = 5e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 41 tgcatctcactcctttgtgctctctatgcttctg 74
|||||||||||||||||| |||||||| ||||||
Sbjct: 43 tgcatctcactcctttgtactctctatacttctg 76
>45761_miR157:micropc
Length = 83
Score = 52.0 bits (26), Expect = 5e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 41 tgcatctcactcctttgtgctctctatgcttctg 74
|||||||| |||||||||||||||||| ||||||
Sbjct: 47 tgcatctcgctcctttgtgctctctattcttctg 80
>44901_miR156:micropc
Length = 72
Score = 52.0 bits (26), Expect = 5e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 41 tgcatctcactcctttgtgctctctatgcttctg 74
|||||||||||||||||| |||||||| ||||||
Sbjct: 39 tgcatctcactcctttgtactctctatacttctg 72
>46572_miR157:micropc
Length = 83
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 gcatctcactcctttgtgctctcta 66
|||||||||||||||||||||||||
Sbjct: 48 gcatctcactcctttgtgctctcta 72
>46332_miR157:micropc
Length = 162
Score = 50.1 bits (25), Expect = 2e-07
Identities = 35/37 (94%), Gaps = 1/37 (2%)
Strand = Plus / Plus
Query: 39 tatgcatctcactcc-tttgtgctctctatgcttctg 74
||||||| ||||||| |||||||||||||||||||||
Sbjct: 123 tatgcatttcactccatttgtgctctctatgcttctg 159
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatg 22
||||||||||||||||||||||
Sbjct: 5 cagaagatagagagcacagatg 26
>45959_miR157:micropc
Length = 161
Score = 50.1 bits (25), Expect = 2e-07
Identities = 35/37 (94%), Gaps = 1/37 (2%)
Strand = Plus / Plus
Query: 39 tatgcatctcactcc-tttgtgctctctatgcttctg 74
||||||| ||||||| |||||||||||||||||||||
Sbjct: 122 tatgcatttcactccatttgtgctctctatgcttctg 158
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatg 22
||||||||||||||||||||||
Sbjct: 4 cagaagatagagagcacagatg 25
>45352_miR156:micropc
Length = 155
Score = 50.1 bits (25), Expect = 2e-07
Identities = 35/37 (94%), Gaps = 1/37 (2%)
Strand = Plus / Plus
Query: 39 tatgcatctcactcc-tttgtgctctctatgcttctg 74
||||||| ||||||| |||||||||||||||||||||
Sbjct: 119 tatgcatttcactccatttgtgctctctatgcttctg 155
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatg 22
||||||||||||||||||||||
Sbjct: 1 cagaagatagagagcacagatg 22
>44931_miR157:micropc
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 gcatctcactcctttgtgctctcta 66
|||||||||||||||||||||||||
Sbjct: 49 gcatctcactcctttgtgctctcta 73
>44856_miR156:micropc
Length = 77
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 gcatctcactcctttgtgctctcta 66
|||||||||||||||||||||||||
Sbjct: 45 gcatctcactcctttgtgctctcta 69
>46595_miR157:micropc
Length = 84
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 tcactcctttgtgctctctatgcttctg 74
||||||||| ||||||||||||||||||
Sbjct: 54 tcactccttcgtgctctctatgcttctg 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 4 cagaagatagagagcacaga 23
>46488_miR156:micropc
Length = 78
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 tcactcctttgtgctctctatgcttctg 74
||||||||| ||||||||||||||||||
Sbjct: 51 tcactccttcgtgctctctatgcttctg 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 1 cagaagatagagagcacaga 20
>45574_miR157:micropc
Length = 85
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 tcactcctttgtgctctctatgcttctg 74
||||||||| ||||||||||||||||||
Sbjct: 55 tcactccttcgtgctctctatgcttctg 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 5 cagaagatagagagcacaga 24
>46391_miR157:micropc
Length = 129
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatg 22
||||||||||||||||||||||
Sbjct: 4 cagaagatagagagcacagatg 25
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54 tttgtgctctctatgcttc 72
|||||||||||||||||||
Sbjct: 106 tttgtgctctctatgcttc 124
>46149_miR156:micropc
Length = 83
Score = 44.1 bits (22), Expect = 1e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 42 gcatctcactcc-tttgtgctctctatgcttctg 74
|||||||||| | |||||||||||||||||||||
Sbjct: 50 gcatctcacttcatttgtgctctctatgcttctg 83
>46100_miR157:micropc
Length = 89
Score = 44.1 bits (22), Expect = 1e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 42 gcatctcactcc-tttgtgctctctatgcttctg 74
|||||||||| | |||||||||||||||||||||
Sbjct: 53 gcatctcacttcatttgtgctctctatgcttctg 86
>45968_miR157:micropc
Length = 90
Score = 44.1 bits (22), Expect = 1e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 42 gcatctcactcc-tttgtgctctctatgcttctg 74
|||||||||| | |||||||||||||||||||||
Sbjct: 54 gcatctcacttcatttgtgctctctatgcttctg 87
>45944_miR157:micropc
Length = 136
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatg 22
||||||||||||||||||||||
Sbjct: 4 cagaagatagagagcacagatg 25
>45911_miR157:micropc
Length = 130
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatg 22
||||||||||||||||||||||
Sbjct: 5 cagaagatagagagcacagatg 26
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54 tttgtgctctctatgcttc 72
|||||||||||||||||||
Sbjct: 107 tttgtgctctctatgcttc 125
>45877_miR156:micropc
Length = 123
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatg 22
||||||||||||||||||||||
Sbjct: 1 cagaagatagagagcacagatg 22
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54 tttgtgctctctatgcttc 72
|||||||||||||||||||
Sbjct: 103 tttgtgctctctatgcttc 121
>44820_miR157:micropc
Length = 137
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatg 22
||||||||||||||||||||||
Sbjct: 5 cagaagatagagagcacagatg 26
>46518_miR156:micropc
Length = 92
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tttgtgctctctatgcttctg 74
|||||||||||||||||||||
Sbjct: 72 tttgtgctctctatgcttctg 92
>45009_miR157:micropc
Length = 99
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tttgtgctctctatgcttctg 74
|||||||||||||||||||||
Sbjct: 76 tttgtgctctctatgcttctg 96
>44895_miR157:micropc
Length = 98
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tttgtgctctctatgcttctg 74
|||||||||||||||||||||
Sbjct: 75 tttgtgctctctatgcttctg 95
>46632_miR157:micropc
Length = 144
Score = 38.2 bits (19), Expect = 8e-04
Identities = 32/35 (91%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 41 tgcatctc-actcctttgtgctctctatgcttctg 74
|||||||| |||| |||||||||||||| ||||||
Sbjct: 107 tgcatctctactcttttgtgctctctatacttctg 141
>46252_miR157:micropc
Length = 146
Score = 38.2 bits (19), Expect = 8e-04
Identities = 32/35 (91%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 41 tgcatctc-actcctttgtgctctctatgcttctg 74
|||||||| |||| |||||||||||||| ||||||
Sbjct: 108 tgcatctctactcttttgtgctctctatacttctg 142
>45978_miR156:micropc
Length = 138
Score = 38.2 bits (19), Expect = 8e-04
Identities = 32/35 (91%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 41 tgcatctc-actcctttgtgctctctatgcttctg 74
|||||||| |||| |||||||||||||| ||||||
Sbjct: 104 tgcatctctactcttttgtgctctctatacttctg 138
