miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>44833_miR393:micropc
          Length = 80

 Score =  159 bits (80), Expect = 4e-40
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tccaaagggatcgcattgatccatctgtccactcggatttcaatctcagttgataatttg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatccatctgtccactcggatttcaatctcagttgataatttg 60

                              
Query: 61 gatcatgcgatctcttcgga 80
          ||||||||||||||||||||
Sbjct: 61 gatcatgcgatctcttcgga 80




>46013_miR393:micropc
          Length = 129

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 50  ttgataatttggatcatgcgatctctt 76
           |||||||||||||||||||||||||||
Sbjct: 99  ttgataatttggatcatgcgatctctt 125



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tccaaagggatcgcattgatcc 22
          ||||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatcc 22




>45076_miR393:micropc
          Length = 129

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 50  ttgataatttggatcatgcgatctctt 76
           |||||||||||||||||||||||||||
Sbjct: 99  ttgataatttggatcatgcgatctctt 125



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tccaaagggatcgcattgatcc 22
          ||||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatcc 22




>46520_miR393:micropc
          Length = 129

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 51  tgataatttggatcatgcgatctctt 76
           ||||||||||||||||||||||||||
Sbjct: 100 tgataatttggatcatgcgatctctt 125



 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 1  tccaaagggatcgcattgatcca 23
          |||||||||| ||||||||||||
Sbjct: 1  tccaaagggaccgcattgatcca 23




>46564_miR393:micropc
          Length = 66

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tccaaagggatcgcattgatcc 22
          ||||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatcc 22



 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 60 ggatcatgcgatctcttcgga 80
          |||||||||||||||||||||
Sbjct: 46 ggatcatgcgatctcttcgga 66




>45858_miR393:micropc
          Length = 74

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tccaaagggatcgcattgatcc 22
          ||||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatcc 22




>45495_miR393:micropc
          Length = 92

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tccaaagggatcgcattgatcc 22
          ||||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatcc 22




>45377_miR393:micropc
          Length = 74

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tccaaagggatcgcattgatcc 22
          ||||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatcc 22




>45319_miR393:micropc
          Length = 66

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tccaaagggatcgcattgatcc 22
          ||||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatcc 22



 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 60 ggatcatgcgatctcttcgga 80
          |||||||||||||||||||||
Sbjct: 46 ggatcatgcgatctcttcgga 66




>44959_miR393:micropc
          Length = 95

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tccaaagggatcgcattgatcc 22
          ||||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatcc 22




>44849_miR393:micropc
          Length = 92

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tccaaagggatcgcattgatcc 22
          ||||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatcc 22




>46785_miR393:micropc
          Length = 95

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tccaaagggatcgcattgatc 21
          |||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatc 21




>46633_miR393:micropc
          Length = 89

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tccaaagggatcgcattgatc 21
          |||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatc 21




>46578_miR393:micropc
          Length = 95

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tccaaagggatcgcattgatc 21
          |||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatc 21




>46496_miR393:micropc
          Length = 89

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tccaaagggatcgcattgatc 21
          |||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatc 21




>46398_miR393:micropc
          Length = 89

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tccaaagggatcgcattgatc 21
          |||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatc 21




>46145_miR393:micropc
          Length = 95

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tccaaagggatcgcattgatc 21
          |||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatc 21




>45740_miR393:micropc
          Length = 89

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tccaaagggatcgcattgatc 21
          |||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatc 21




>45563_miR393:micropc
          Length = 95

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tccaaagggatcgcattgatc 21
          |||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatc 21




>45326_miR393:micropc
          Length = 95

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tccaaagggatcgcattgatc 21
          |||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatc 21




>45020_miR393:micropc
          Length = 89

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tccaaagggatcgcattgatc 21
          |||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatc 21




>44947_miR393:micropc
          Length = 89

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tccaaagggatcgcattgatc 21
          |||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatc 21