miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46028_miR398:micropc
Length = 150
Score = 297 bits (150), Expect = 2e-81
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 32 aggagtgacactaagaacacatatggtggaattgctcttttacatatataaaaggtgcaa 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggagtgacactaagaacacatatggtggaattgctcttttacatatataaaaggtgcaa 60
Query: 92 tgatatgttgtactgtacaaatatccaatgcacatacttttgtttgtaaagtcttgtcgg 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgatatgttgtactgtacaaatatccaatgcacatacttttgtttgtaaagtcttgtcgg 120
Query: 152 caatccgtatgtgttctcaggtcacccctt 181
||||||||||||||||||||||||||||||
Sbjct: 121 caatccgtatgtgttctcaggtcacccctt 150
>46703_miR398:micropc
Length = 149
Score = 295 bits (149), Expect = 7e-81
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 32 aggagtgacactaagaacacatatggtggaattgctcttttacatatataaaaggtgcaa 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggagtgacactaagaacacatatggtggaattgctcttttacatatataaaaggtgcaa 60
Query: 92 tgatatgttgtactgtacaaatatccaatgcacatacttttgtttgtaaagtcttgtcgg 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgatatgttgtactgtacaaatatccaatgcacatacttttgtttgtaaagtcttgtcgg 120
Query: 152 caatccgtatgtgttctcaggtcacccct 180
|||||||||||||||||||||||||||||
Sbjct: 121 caatccgtatgtgttctcaggtcacccct 149
>46357_miR398:micropc
Length = 139
Score = 63.9 bits (32), Expect = 5e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 32 aggagtgacactaagaacacatatggtggaattgct 67
||||||||||||||||||||||||||| ||||||||
Sbjct: 1 aggagtgacactaagaacacatatggttgaattgct 36
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tgtgttctcaggtcacccct 180
||||||||||||||||||||
Sbjct: 120 tgtgttctcaggtcacccct 139
>46128_miR398:micropc
Length = 140
Score = 63.9 bits (32), Expect = 5e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 32 aggagtgacactaagaacacatatggtggaattgct 67
||||||||||||||||||||||||||| ||||||||
Sbjct: 1 aggagtgacactaagaacacatatggttgaattgct 36
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tgtgttctcaggtcacccctt 181
|||||||||||||||||||||
Sbjct: 120 tgtgttctcaggtcacccctt 140
>45602_miR398:micropc
Length = 142
Score = 63.9 bits (32), Expect = 5e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 32 aggagtgacactaagaacacatatggtggaattgct 67
||||||||||||||||||||||||||| ||||||||
Sbjct: 1 aggagtgacactaagaacacatatggttgaattgct 36
Score = 42.1 bits (21), Expect = 2e-04
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 94 atatgttgtactgtacaaatatccaatgcacatacttttgtttgt 138
||||||||||| |||||||| | | |||||||||| ||||||||
Sbjct: 54 atatgttgtacagtacaaattttcgatgcacatacagttgtttgt 98
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tgtgttctcaggtcacccct 180
||||||||||||||||||||
Sbjct: 123 tgtgttctcaggtcacccct 142
>45412_miR398:micropc
Length = 143
Score = 63.9 bits (32), Expect = 5e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 32 aggagtgacactaagaacacatatggtggaattgct 67
||||||||||||||||||||||||||| ||||||||
Sbjct: 1 aggagtgacactaagaacacatatggttgaattgct 36
Score = 42.1 bits (21), Expect = 2e-04
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 94 atatgttgtactgtacaaatatccaatgcacatacttttgtttgt 138
||||||||||| |||||||| | | |||||||||| ||||||||
Sbjct: 54 atatgttgtacagtacaaattttcgatgcacatacagttgtttgt 98
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tgtgttctcaggtcacccctt 181
|||||||||||||||||||||
Sbjct: 123 tgtgttctcaggtcacccctt 143
>45118_miR398:micropc
Length = 139
Score = 63.9 bits (32), Expect = 5e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 32 aggagtgacactaagaacacatatggtggaattgct 67
||||||||||||||||||||||||||| ||||||||
Sbjct: 1 aggagtgacactaagaacacatatggttgaattgct 36
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tgtgttctcaggtcacccct 180
||||||||||||||||||||
Sbjct: 120 tgtgttctcaggtcacccct 139
>45917_miR398:micropc
Length = 140
Score = 56.0 bits (28), Expect = 1e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 32 aggagtgacactaagaacacatatggtggaattgct 67
||||||||||||||||||||| ||||| ||||||||
Sbjct: 1 aggagtgacactaagaacacacatggttgaattgct 36
Score = 46.1 bits (23), Expect = 1e-05
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 94 atatgttgtactgtacaaatatccaatgcacatacttttgtttgtaaagtcttgtcggca 153
||||||||||| |||||||| | | |||||||||| |||||||| | ||||| |
Sbjct: 54 atatgttgtacagtacaaattttcgatgcacatacagttgtttgtgagacattgtctacc 113
Query: 154 atccgtatgtgttctcaggtcacccct 180
|||| | ||||||||||||||||||||
Sbjct: 114 atccatttgtgttctcaggtcacccct 140
>45213_miR398:micropc
Length = 141
Score = 56.0 bits (28), Expect = 1e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 32 aggagtgacactaagaacacatatggtggaattgct 67
||||||||||||||||||||| ||||| ||||||||
Sbjct: 1 aggagtgacactaagaacacacatggttgaattgct 36
Score = 48.1 bits (24), Expect = 3e-06
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 94 atatgttgtactgtacaaatatccaatgcacatacttttgtttgtaaagtcttgtcggca 153
||||||||||| |||||||| | | |||||||||| |||||||| | ||||| |
Sbjct: 54 atatgttgtacagtacaaattttcgatgcacatacagttgtttgtgagacattgtctacc 113
Query: 154 atccgtatgtgttctcaggtcacccctt 181
|||| | |||||||||||||||||||||
Sbjct: 114 atccatttgtgttctcaggtcacccctt 141
>46761_miR398:micropc
Length = 133
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tgtgttctcaggtcacccctt 181
|||||||||||||||||||||
Sbjct: 113 tgtgttctcaggtcacccctt 133
>46499_miR398:micropc
Length = 67
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tgtgttctcaggtcacccctt 181
|||||||||||||||||||||
Sbjct: 47 tgtgttctcaggtcacccctt 67
>46384_miR398:micropc
Length = 107
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tgtgttctcaggtcacccctt 181
|||||||||||||||||||||
Sbjct: 87 tgtgttctcaggtcacccctt 107
Score = 40.1 bits (20), Expect = 7e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 32 aggagtgacactaagaacacatatggtggaat 63
|||||||| ||||||||||||| || ||||||
Sbjct: 1 aggagtgatactaagaacacatgtgatggaat 32
>46310_miR398:micropc
Length = 113
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tgtgttctcaggtcacccctt 181
|||||||||||||||||||||
Sbjct: 93 tgtgttctcaggtcacccctt 113
>46124_miR398:micropc
Length = 97
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 atgtgttctcaggtcacccct 180
|||||||||||||||||||||
Sbjct: 76 atgtgttctcaggtcacccct 96
>45871_miR398:micropc
Length = 140
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tgtgttctcaggtcacccctt 181
|||||||||||||||||||||
Sbjct: 120 tgtgttctcaggtcacccctt 140
>45772_miR398:micropc
Length = 92
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tgtgttctcaggtcacccctt 181
|||||||||||||||||||||
Sbjct: 72 tgtgttctcaggtcacccctt 92
>45706_miR398:micropc
Length = 106
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 atgtgttctcaggtcacccct 180
|||||||||||||||||||||
Sbjct: 86 atgtgttctcaggtcacccct 106
>45380_miR398:micropc
Length = 108
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 atgtgttctcaggtcacccct 180
|||||||||||||||||||||
Sbjct: 87 atgtgttctcaggtcacccct 107
>45370_miR398:micropc
Length = 95
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 atgtgttctcaggtcacccct 180
|||||||||||||||||||||
Sbjct: 75 atgtgttctcaggtcacccct 95
>45083_miR398:micropc
Length = 92
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tgtgttctcaggtcacccctt 181
|||||||||||||||||||||
Sbjct: 72 tgtgttctcaggtcacccctt 92
>46491_miR398:micropc
Length = 131
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tgtgttctcaggtcacccct 180
||||||||||||||||||||
Sbjct: 112 tgtgttctcaggtcacccct 131
>46478_miR398:micropc
Length = 105
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tgtgttctcaggtcacccct 180
||||||||||||||||||||
Sbjct: 86 tgtgttctcaggtcacccct 105
>46328_miR398:micropc
Length = 138
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tgtgttctcaggtcacccct 180
||||||||||||||||||||
Sbjct: 119 tgtgttctcaggtcacccct 138
>46301_miR398:micropc
Length = 111
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tgtgttctcaggtcacccct 180
||||||||||||||||||||
Sbjct: 92 tgtgttctcaggtcacccct 111
>45427_miR398:micropc
Length = 94
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tgtgttctcaggtcacccct 180
||||||||||||||||||||
Sbjct: 75 tgtgttctcaggtcacccct 94
>45288_miR398:micropc
Length = 65
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tgtgttctcaggtcacccct 180
||||||||||||||||||||
Sbjct: 46 tgtgttctcaggtcacccct 65
>44964_miR398:micropc
Length = 94
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tgtgttctcaggtcacccct 180
||||||||||||||||||||
Sbjct: 75 tgtgttctcaggtcacccct 94
