miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>46312_miR398:micropc
          Length = 60

 Score =  119 bits (60), Expect = 3e-28
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                      
Query: 8  ggtgtgacatgagaacacacgatatacttcgatatttttcacgtgttctcaggtcgcccc 67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtgtgacatgagaacacacgatatacttcgatatttttcacgtgttctcaggtcgcccc 60




>45930_miR398:micropc
          Length = 63

 Score = 91.7 bits (46), Expect = 7e-20
 Identities = 59/62 (95%), Gaps = 1/62 (1%)
 Strand = Plus / Plus

                                                                      
Query: 6  caggtgtgacatgagaacacacgatatacttcgatatttttcacgtgttctcaggtcgcc 65
          ||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||
Sbjct: 1  caggtgtgacatgagaacacatgatatacttagata-ttttcacgtgttctcaggtcgcc 59

            
Query: 66 cc 67
          ||
Sbjct: 60 cc 61




>44941_miR398:micropc
          Length = 61

 Score = 89.7 bits (45), Expect = 3e-19
 Identities = 58/61 (95%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                      
Query: 7  aggtgtgacatgagaacacacgatatacttcgatatttttcacgtgttctcaggtcgccc 66
          |||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1  aggtgtgacatgagaacacatgatatacttagata-ttttcacgtgttctcaggtcgccc 59

           
Query: 67 c 67
          |
Sbjct: 60 c 60




>46367_miR398:micropc
          Length = 73

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 47 cacgtgttctcaggtcgcccc 67
          |||||||||||||||||||||
Sbjct: 51 cacgtgttctcaggtcgcccc 71




>45384_miR398:micropc
          Length = 83

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 47 cacgtgttctcaggtcgcccc 67
          |||||||||||||||||||||
Sbjct: 62 cacgtgttctcaggtcgcccc 82




>45163_miR398:micropc
          Length = 71

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 47 cacgtgttctcaggtcgcccc 67
          |||||||||||||||||||||
Sbjct: 50 cacgtgttctcaggtcgcccc 70




>45087_miR398:micropc
          Length = 84

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 47 cacgtgttctcaggtcgcccc 67
          |||||||||||||||||||||
Sbjct: 62 cacgtgttctcaggtcgcccc 82




>46686_miR398:micropc
          Length = 96

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 45 ttcacgtgttctcaggtcgcccc 67
          |||| ||||||||||||||||||
Sbjct: 73 ttcatgtgttctcaggtcgcccc 95




>45294_miR398:micropc
          Length = 98

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 45 ttcacgtgttctcaggtcgcccc 67
          |||| ||||||||||||||||||
Sbjct: 74 ttcatgtgttctcaggtcgcccc 96