miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45994_miR1436:micropc
Length = 162
Score = 321 bits (162), Expect = 1e-88
Identities = 162/162 (100%)
Strand = Plus / Plus
Query: 12 acttcctccgtttctaaatataagtcttttaagcgatttctctaaaggactacatacaaa 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acttcctccgtttctaaatataagtcttttaagcgatttctctaaaggactacatacaaa 60
Query: 72 gcaaaatgagtgaatctacactctaaagtatgtctatatacatccgtatgtagtcctcta 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcaaaatgagtgaatctacactctaaagtatgtctatatacatccgtatgtagtcctcta 120
Query: 132 gtggaatctctaaaaagacttatattatggaacggagggagt 173
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtggaatctctaaaaagacttatattatggaacggagggagt 162
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 117 gtatgtagtcctctagtggaatctctaaaaagacttatatt 157
|||||||||||| ||| | |||| || ||||||||||||||
Sbjct: 57 gtatgtagtcctttagagaaatcgcttaaaagacttatatt 17
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 28 aatataagtcttttaagcgatttctctaaaggactacatac 68
|||||||||||||| || |||| | ||| ||||||||||||
Sbjct: 146 aatataagtctttttagagattccactagaggactacatac 106
>45049_miR1126:micropc
Length = 86
Score = 83.8 bits (42), Expect = 4e-17
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 58 ggactacatacaaagcaaaatgagtgaatctacactctaaagtatgtctatatacatccg 117
|||| |||||| ||||||| |||||| | ||||||||| ||||||||||||||||||||
Sbjct: 78 ggacaacatacggagcaaaacgagtgattgtacactctacagtatgtctatatacatccg 19
Query: 118 tatgtagtcc 127
||||||||||
Sbjct: 18 tatgtagtcc 9
>46744_miR1436:micropc
Length = 83
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 150 cttatattatggaacggagggagt 173
||||||||||||||||||||||||
Sbjct: 24 cttatattatggaacggagggagt 1
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 150 cttatattatggaacggagggagt 173
|||||||||||| |||||||||||
Sbjct: 60 cttatattatgggacggagggagt 83
>46683_miR1436:micropc
Length = 60
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 147 agacttatattatggaacggagggagt 173
||||||||||||||| |||||||||||
Sbjct: 34 agacttatattatgggacggagggagt 60
>46825_miR1436:micropc
Length = 89
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 152 tatattatggaacggagggagt 173
||||||||||||||||||||||
Sbjct: 68 tatattatggaacggagggagt 89
>46353_miR1436:micropc
Length = 89
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 152 tatattatggaacggagggagt 173
||||||||||||||||||||||
Sbjct: 68 tatattatggaacggagggagt 89
>45775_miR1436:micropc
Length = 89
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 152 tatattatggaacggagggagt 173
||||||||||||||||||||||
Sbjct: 68 tatattatggaacggagggagt 89
>44799_miR1126:micropc
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 58 ggactacatacaaagcaaaatgagtgaatctacactctaaa 98
||||||| ||| |||||||| | |||||||||||||||||
Sbjct: 9 ggactacttacggagcaaaataaatgaatctacactctaaa 49
