miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>40405_ahy-MIR408:mirbase
          Length = 122

 Score =  101 bits (51), Expect = 2e-22
 Identities = 61/63 (96%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                      
Query: 16 agaagagatgacaaaga-ctggggacaggcagagcatgaatggaactatcaatagacaca 74
          ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3  agaagagatgacaaagaactgggaacaggcagagcatgaatggaactatcaatagacaca 62

             
Query: 75 ttt 77
          |||
Sbjct: 63 ttt 65



 Score = 87.7 bits (44), Expect = 3e-18
 Identities = 47/48 (97%)
 Strand = Plus / Plus

                                                           
Query: 162 acgctcatgcactgcctcttccctggctctctcgttctttttccttct 209
           ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 75  acgctcatgcactgcctcttccctggctctctctttctttttccttct 122




>40404_ahy-MIR408:mirbase
          Length = 122

 Score =  101 bits (51), Expect = 2e-22
 Identities = 61/63 (96%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                      
Query: 16 agaagagatgacaaaga-ctggggacaggcagagcatgaatggaactatcaatagacaca 74
          ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3  agaagagatgacaaagaactgggaacaggcagagcatgaatggaactatcaatagacaca 62

             
Query: 75 ttt 77
          |||
Sbjct: 63 ttt 65



 Score = 87.7 bits (44), Expect = 3e-18
 Identities = 47/48 (97%)
 Strand = Plus / Plus

                                                           
Query: 162 acgctcatgcactgcctcttccctggctctctcgttctttttccttct 209
           ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 75  acgctcatgcactgcctcttccctggctctctctttctttttccttct 122




>41252_csi-MIR408:mirbase
          Length = 153

 Score = 54.0 bits (27), Expect = 5e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 167 catgcactgcctcttccctggctctct 193
           |||||||||||||||||||||||||||
Sbjct: 119 catgcactgcctcttccctggctctct 145



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                           
Query: 28 aaagactggggacaggcagagcatgaatggaac 60
          |||||| ||| |||||||||||||| |||||||
Sbjct: 56 aaagacggggaacaggcagagcatggatggaac 88




>41683_vvi-MIR408:mirbase
          Length = 107

 Score = 50.1 bits (25), Expect = 7e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 167 catgcactgcctcttccctggctct 191
           |||||||||||||||||||||||||
Sbjct: 76  catgcactgcctcttccctggctct 100




>39490_ppt-MIR408b:mirbase
          Length = 144

 Score = 50.1 bits (25), Expect = 7e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 165 ctcatgcactgcctcttccctggct 189
           |||||||||||||||||||||||||
Sbjct: 90  ctcatgcactgcctcttccctggct 114




>40108_ath-MIR408:mirbase
          Length = 218

 Score = 48.1 bits (24), Expect = 3e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 167 catgcactgcctcttccctggctc 190
           ||||||||||||||||||||||||
Sbjct: 119 catgcactgcctcttccctggctc 142




>39897_aly-MIR408:mirbase
          Length = 211

 Score = 48.1 bits (24), Expect = 3e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 167 catgcactgcctcttccctggctc 190
           ||||||||||||||||||||||||
Sbjct: 116 catgcactgcctcttccctggctc 139




>41463_ptc-MIR408:mirbase
          Length = 105

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 167 catgcactgcctcttccctggct 189
           |||||||||||||||||||||||
Sbjct: 75  catgcactgcctcttccctggct 97




>41193_aqc-MIR408:mirbase
          Length = 87

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 167 catgcactgcctcttccctggct 189
           |||||||||||||||||||||||
Sbjct: 23  catgcactgcctcttccctggct 1




>39428_pta-MIR408:mirbase
          Length = 86

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 168 atgcactgcctcttccctggctc 190
           |||||||||||||||||||||||
Sbjct: 64  atgcactgcctcttccctggctc 86




>42830_zma-MIR408b:mirbase
          Length = 147

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 169 tgcactgcctcttccctggctc 190
           ||||||||||||||||||||||
Sbjct: 126 tgcactgcctcttccctggctc 147




>42829_zma-MIR408:mirbase
          Length = 191

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 169 tgcactgcctcttccctggctc 190
           ||||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggctc 174




>42647_tae-MIR408:mirbase
          Length = 187

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 169 tgcactgcctcttccctggctc 190
           ||||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggctc 158




>42474_ssp-MIR408d:mirbase
          Length = 180

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 169 tgcactgcctcttccctggctc 190
           ||||||||||||||||||||||
Sbjct: 159 tgcactgcctcttccctggctc 180




>42473_ssp-MIR408a:mirbase
          Length = 248

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 169 tgcactgcctcttccctggctc 190
           ||||||||||||||||||||||
Sbjct: 227 tgcactgcctcttccctggctc 248




>42465_sof-MIR408d:mirbase
          Length = 215

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 169 tgcactgcctcttccctggctc 190
           ||||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggctc 198




>42464_sof-MIR408c:mirbase
          Length = 286

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 169 tgcactgcctcttccctggctc 190
           ||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctc 269




>42463_sof-MIR408b:mirbase
          Length = 286

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 169 tgcactgcctcttccctggctc 190
           ||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctc 269




>42462_sof-MIR408a:mirbase
          Length = 283

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 169 tgcactgcctcttccctggctc 190
           ||||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggctc 266




>42052_osa-MIR408:mirbase
          Length = 213

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 169 tgcactgcctcttccctggctc 190
           ||||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggctc 175




>39742_smo-MIR408:mirbase
          Length = 109

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 168 atgcactgcctcttccctggct 189
           ||||||||||||||||||||||
Sbjct: 76  atgcactgcctcttccctggct 97




>42600_sbi-MIR408:mirbase
          Length = 205

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 169 tgcactgcctcttccctggct 189
           |||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205




>40391_rco-MIR408:mirbase
          Length = 92

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 169 tgcactgcctcttccctggct 189
           |||||||||||||||||||||
Sbjct: 68  tgcactgcctcttccctggct 88