miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41463_ptc-MIR408:mirbase
          Length = 105

 Score = 79.8 bits (40), Expect = 4e-16
 Identities = 70/80 (87%)
 Strand = Plus / Plus

                                                                      
Query: 17 gggaacagacagagcatgaatggaactactaacacgtttacctgtttctgctctacccat 76
          |||||||| ||||||||| ||||| |||||||||    ||| |||||  |||||||||||
Sbjct: 18 gggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctacccat 77

                              
Query: 77 gcactgcctcttccctggct 96
          ||||||||||||||||||||
Sbjct: 78 gcactgcctcttccctggct 97




>41683_vvi-MIR408:mirbase
          Length = 107

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                    
Query: 58  ctgtttctgctctacccatgcactgcctcttccctggctct 98
           |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 60  ctgtttttgctctacccatgcactgcctcttccctggctct 100




>41252_csi-MIR408:mirbase
          Length = 153

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 72/84 (85%), Gaps = 1/84 (1%)
 Strand = Plus / Plus

                                                                       
Query: 17  gggaacagacagagcatgaatggaactactaacacgtttacctgtttctgctctacccat 76
           |||||||| ||||||||| ||||||| | ||||| |||  | |||||  ||||  |||||
Sbjct: 63  gggaacaggcagagcatggatggaaccattaacaggttctc-tgttttggctcctcccat 121

                                   
Query: 77  gcactgcctcttccctggctctct 100
           ||||||||||||||||||||||||
Sbjct: 122 gcactgcctcttccctggctctct 145




>40108_ath-MIR408:mirbase
          Length = 218

 Score = 61.9 bits (31), Expect = 9e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 67  ctctacccatgcactgcctcttccctggctc 97
           |||||||||||||||||||||||||||||||
Sbjct: 112 ctctacccatgcactgcctcttccctggctc 142




>39897_aly-MIR408:mirbase
          Length = 211

 Score = 61.9 bits (31), Expect = 9e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 67  ctctacccatgcactgcctcttccctggctc 97
           |||||||||||||||||||||||||||||||
Sbjct: 109 ctctacccatgcactgcctcttccctggctc 139




>40405_ahy-MIR408:mirbase
          Length = 122

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 74  catgcactgcctcttccctggctctctc 101
           ||||||||||||||||||||||||||||
Sbjct: 80  catgcactgcctcttccctggctctctc 107



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 17 gggaacagacagagcatgaatggaacta 44
          |||||||| |||||||||||||||||||
Sbjct: 23 gggaacaggcagagcatgaatggaacta 50




>40404_ahy-MIR408:mirbase
          Length = 122

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 74  catgcactgcctcttccctggctctctc 101
           ||||||||||||||||||||||||||||
Sbjct: 80  catgcactgcctcttccctggctctctc 107



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 17 gggaacagacagagcatgaatggaacta 44
          |||||||| |||||||||||||||||||
Sbjct: 23 gggaacaggcagagcatgaatggaacta 50




>40391_rco-MIR408:mirbase
          Length = 92

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 66 gctctacccatgcactgcctcttccctggct 96
          ||||||||| |||||||||||||||||||||
Sbjct: 58 gctctacccctgcactgcctcttccctggct 88




>41193_aqc-MIR408:mirbase
          Length = 87

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 73 ccatgcactgcctcttccctggct 96
          ||||||||||||||||||||||||
Sbjct: 24 ccatgcactgcctcttccctggct 1




>42474_ssp-MIR408d:mirbase
          Length = 180

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 71  acccatgcactgcctcttccctggctc 97
           |||| ||||||||||||||||||||||
Sbjct: 154 acccctgcactgcctcttccctggctc 180




>42465_sof-MIR408d:mirbase
          Length = 215

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 71  acccatgcactgcctcttccctggctc 97
           |||| ||||||||||||||||||||||
Sbjct: 172 acccctgcactgcctcttccctggctc 198




>39490_ppt-MIR408b:mirbase
          Length = 144

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 74  catgcactgcctcttccctggct 96
           |||||||||||||||||||||||
Sbjct: 92  catgcactgcctcttccctggct 114




>39428_pta-MIR408:mirbase
          Length = 86

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 75 atgcactgcctcttccctggctc 97
          |||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggctc 86




>42830_zma-MIR408b:mirbase
          Length = 147

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 76  tgcactgcctcttccctggctc 97
           ||||||||||||||||||||||
Sbjct: 126 tgcactgcctcttccctggctc 147




>42829_zma-MIR408:mirbase
          Length = 191

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 76  tgcactgcctcttccctggctc 97
           ||||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggctc 174




>42647_tae-MIR408:mirbase
          Length = 187

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 76  tgcactgcctcttccctggctc 97
           ||||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggctc 158




>42473_ssp-MIR408a:mirbase
          Length = 248

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 76  tgcactgcctcttccctggctc 97
           ||||||||||||||||||||||
Sbjct: 227 tgcactgcctcttccctggctc 248




>42464_sof-MIR408c:mirbase
          Length = 286

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 76  tgcactgcctcttccctggctc 97
           ||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctc 269




>42463_sof-MIR408b:mirbase
          Length = 286

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 76  tgcactgcctcttccctggctc 97
           ||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctc 269




>42462_sof-MIR408a:mirbase
          Length = 283

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 76  tgcactgcctcttccctggctc 97
           ||||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggctc 266




>42052_osa-MIR408:mirbase
          Length = 213

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 76  tgcactgcctcttccctggctc 97
           ||||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggctc 175




>39742_smo-MIR408:mirbase
          Length = 109

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 75 atgcactgcctcttccctggct 96
          ||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97




>42600_sbi-MIR408:mirbase
          Length = 205

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 76  tgcactgcctcttccctggct 96
           |||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205