miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41463_ptc-MIR408:mirbase
          Length = 105

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 70/82 (85%), Gaps = 3/82 (3%)
 Strand = Plus / Plus

                                                                       
Query: 34  gggaacagacagagcatggatagagcttacttacagaaacccttttgttttgacccttcc 93
           |||||||| |||||||||||| ||||| ||| ||||||   |||  |||||| | || ||
Sbjct: 18  gggaacaggcagagcatggatggagct-actaacagaagtactt--gttttggctctacc 74

                                 
Query: 94  catgcactgcctcttccctggc 115
           ||||||||||||||||||||||
Sbjct: 75  catgcactgcctcttccctggc 96




>41252_csi-MIR408:mirbase
          Length = 153

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 91  tcccatgcactgcctcttccctggc 115
           |||||||||||||||||||||||||
Sbjct: 116 tcccatgcactgcctcttccctggc 140




>40108_ath-MIR408:mirbase
          Length = 218

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 79  tgttttgacccttcccatgcactgcctcttccctggc 115
           ||||||| | || ||||||||||||||||||||||||
Sbjct: 104 tgttttgtctctacccatgcactgcctcttccctggc 140




>39897_aly-MIR408:mirbase
          Length = 211

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 79  tgttttgacccttcccatgcactgcctcttccctggc 115
           ||||||| | || ||||||||||||||||||||||||
Sbjct: 101 tgttttgtctctacccatgcactgcctcttccctggc 137




>41683_vvi-MIR408:mirbase
          Length = 107

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 92  cccatgcactgcctcttccctggc 115
           ||||||||||||||||||||||||
Sbjct: 74  cccatgcactgcctcttccctggc 97




>41193_aqc-MIR408:mirbase
          Length = 87

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 93  ccatgcactgcctcttccctggc 115
           |||||||||||||||||||||||
Sbjct: 24  ccatgcactgcctcttccctggc 2




>40405_ahy-MIR408:mirbase
          Length = 122

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 94  catgcactgcctcttccctggc 115
           ||||||||||||||||||||||
Sbjct: 80  catgcactgcctcttccctggc 101




>40404_ahy-MIR408:mirbase
          Length = 122

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 94  catgcactgcctcttccctggc 115
           ||||||||||||||||||||||
Sbjct: 80  catgcactgcctcttccctggc 101




>39490_ppt-MIR408b:mirbase
          Length = 144

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 94  catgcactgcctcttccctggc 115
           ||||||||||||||||||||||
Sbjct: 92  catgcactgcctcttccctggc 113




>42830_zma-MIR408b:mirbase
          Length = 147

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  tcccatgcactgcctcttccctggc 115
           |||| ||||||||||||||||||||
Sbjct: 121 tcccctgcactgcctcttccctggc 145




>42829_zma-MIR408:mirbase
          Length = 191

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  tcccatgcactgcctcttccctggc 115
           |||| ||||||||||||||||||||
Sbjct: 148 tcccctgcactgcctcttccctggc 172




>42600_sbi-MIR408:mirbase
          Length = 205

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  tcccatgcactgcctcttccctggc 115
           |||| ||||||||||||||||||||
Sbjct: 180 tcccctgcactgcctcttccctggc 204




>42473_ssp-MIR408a:mirbase
          Length = 248

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  tcccatgcactgcctcttccctggc 115
           |||| ||||||||||||||||||||
Sbjct: 222 tcccctgcactgcctcttccctggc 246




>42464_sof-MIR408c:mirbase
          Length = 286

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  tcccatgcactgcctcttccctggc 115
           |||| ||||||||||||||||||||
Sbjct: 243 tcccctgcactgcctcttccctggc 267




>42463_sof-MIR408b:mirbase
          Length = 286

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  tcccatgcactgcctcttccctggc 115
           |||| ||||||||||||||||||||
Sbjct: 243 tcccctgcactgcctcttccctggc 267




>42462_sof-MIR408a:mirbase
          Length = 283

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  tcccatgcactgcctcttccctggc 115
           |||| ||||||||||||||||||||
Sbjct: 240 tcccctgcactgcctcttccctggc 264




>42052_osa-MIR408:mirbase
          Length = 213

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  tcccatgcactgcctcttccctggc 115
           |||| ||||||||||||||||||||
Sbjct: 149 tcccctgcactgcctcttccctggc 173




>40391_rco-MIR408:mirbase
          Length = 92

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 79  tgttttgacccttcccatgcactgcctcttccctggc 115
           ||||||| | || ||| ||||||||||||||||||||
Sbjct: 51  tgttttggctctacccctgcactgcctcttccctggc 87




>39742_smo-MIR408:mirbase
          Length = 109

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 95  atgcactgcctcttccctggc 115
           |||||||||||||||||||||
Sbjct: 76  atgcactgcctcttccctggc 96




>39428_pta-MIR408:mirbase
          Length = 86

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 95  atgcactgcctcttccctggc 115
           |||||||||||||||||||||
Sbjct: 64  atgcactgcctcttccctggc 84




>42647_tae-MIR408:mirbase
          Length = 187

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  tgcactgcctcttccctggc 115
           ||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggc 156




>42474_ssp-MIR408d:mirbase
          Length = 180

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  tgcactgcctcttccctggc 115
           ||||||||||||||||||||
Sbjct: 159 tgcactgcctcttccctggc 178




>42465_sof-MIR408d:mirbase
          Length = 215

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  tgcactgcctcttccctggc 115
           ||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggc 196