miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41640_vvi-MIR390:mirbase
          Length = 140

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 12 agaatctgttaaactcaggagggatagcgcca 43
          |||||||||||| |||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgcca 32



 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 67  tggcgctatctatccagagtttcacggcttcttc 100
           ||||||||||||||| ||||||||||| ||||||
Sbjct: 107 tggcgctatctatcctgagtttcacgggttcttc 140




>41413_ptc-MIR390a:mirbase
          Length = 119

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 12 agaatctgttaaactcaggagggatagcgcca 43
          |||||||||||| |||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgcca 32




>41237_csi-MIR390:mirbase
          Length = 154

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 12 agaatctgttaaactcaggagggatagcgcca 43
          |||||||||||| |||||||||||||||||||
Sbjct: 11 agaatctgttaagctcaggagggatagcgcca 42



 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 67  tggcgctatctatccagagtttcacggcttcttcttact 105
           |||||||||| |||| |||||||| ||||||||||||||
Sbjct: 96  tggcgctatccatcctgagtttcatggcttcttcttact 134




>41053_ghr-MIR390c:mirbase
          Length = 114

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 12 agaatctgttaaactcaggagggatagcgcca 43
          |||||||||||| |||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgcca 32




>41052_ghr-MIR390b:mirbase
          Length = 132

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 12 agaatctgttaaactcaggagggatagcgcca 43
          |||||||||||| |||||||||||||||||||
Sbjct: 8  agaatctgttaagctcaggagggatagcgcca 39




>41051_ghr-MIR390a:mirbase
          Length = 124

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 12 agaatctgttaaactcaggagggatagcgcca 43
          |||||||||||| |||||||||||||||||||
Sbjct: 5  agaatctgttaagctcaggagggatagcgcca 36




>41416_ptc-MIR390d:mirbase
          Length = 106

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 12 agaatctgttaaactcaggagggatagcgcc 42
          |||||||||||| ||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgcc 31




>41414_ptc-MIR390b:mirbase
          Length = 106

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 12 agaatctgttaaactcaggagggatagcgcc 42
          |||||||||||| ||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgcc 31




>41415_ptc-MIR390c:mirbase
          Length = 123

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 15 atctgttaaactcaggagggatagcgcca 43
          ||||||||| |||||||||||||||||||
Sbjct: 4  atctgttaagctcaggagggatagcgcca 32




>41131_tcc-MIR390b:mirbase
          Length = 120

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 12 agaatctgttaaactcaggagggatagcgcca 43
          ||||||||| || |||||||||||||||||||
Sbjct: 11 agaatctgtaaagctcaggagggatagcgcca 42



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 67  tggcgctatctatccagagtttcacggcttcttc 100
           ||||||||||||||| |||||||| || ||||||
Sbjct: 77  tggcgctatctatcctgagtttcatgggttcttc 110




>40468_gma-MIR390a:mirbase
          Length = 105

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 12 agaatctgttaaactcaggagggatagcgcca 43
          ||||||||| || |||||||||||||||||||
Sbjct: 1  agaatctgtaaagctcaggagggatagcgcca 32




>40467_gma-MIR390a:mirbase
          Length = 105

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 12 agaatctgttaaactcaggagggatagcgcca 43
          ||||||||| || |||||||||||||||||||
Sbjct: 1  agaatctgtaaagctcaggagggatagcgcca 32




>40293_bna-MIR390b:mirbase
          Length = 105

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 12 agaatctgttaaactcaggagggatagcgcca 43
          ||||||||| || |||||||||||||||||||
Sbjct: 8  agaatctgtaaagctcaggagggatagcgcca 39




>40072_ath-MIR390a:mirbase
          Length = 107

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 12 agaatctgttaaactcaggagggatagcgcca 43
          ||||||||| || |||||||||||||||||||
Sbjct: 8  agaatctgtaaagctcaggagggatagcgcca 39




>39862_aly-MIR390a:mirbase
          Length = 129

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 12 agaatctgttaaactcaggagggatagcgcca 43
          ||||||||| || |||||||||||||||||||
Sbjct: 19 agaatctgtaaagctcaggagggatagcgcca 50




>41130_tcc-MIR390a:mirbase
          Length = 129

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 17 ctgttaaactcaggagggatagcgcca 43
          ||||||| |||||||||||||||||||
Sbjct: 16 ctgttaagctcaggagggatagcgcca 42




>40705_mtr-MIR390:mirbase
          Length = 100

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 17 ctgttaaactcaggagggatagcgcca 43
          ||||||| |||||||||||||||||||
Sbjct: 1  ctgttaagctcaggagggatagcgcca 27




>40371_rco-MIR390a:mirbase
          Length = 108

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 17 ctgttaaactcaggagggatagcgcc 42
          ||||||| ||||||||||||||||||
Sbjct: 1  ctgttaagctcaggagggatagcgcc 26



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 17  ctgttaaactcaggagggatagcgccac 44
           |||| |||||||||| ||||||||||||
Sbjct: 106 ctgtgaaactcaggatggatagcgccac 79




>40294_bna-MIR390c:mirbase
          Length = 128

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 67  tggcgctatctatccagagtttcacggcttcttcttacttt 107
           |||||||||| |||| ||||| || ||||||||||| ||||
Sbjct: 83  tggcgctatccatcctgagttccatggcttcttcttgcttt 123




>40469_gma-MIR390b:mirbase
          Length = 103

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 12 agaatctgttaaactcaggagggatagc 39
          ||||||||| || |||||||||||||||
Sbjct: 1  agaatctgtaaagctcaggagggatagc 28




>40292_bna-MIR390a:mirbase
          Length = 144

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 64  tattggcgctatctatccagagtttcacggcttcttcttacttt 107
           ||||||||||||| |||| |||||  | ||||||||||| ||||
Sbjct: 90  tattggcgctatccatcctgagttctatggcttcttcttgcttt 133