miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>40646_lja-MIR396:mirbase
          Length = 108

 Score = 69.9 bits (35), Expect = 8e-13
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                 
Query: 14 gtcctctttgtattcttcctcagctttcttgaactgcat 52
          ||||||||||||||||||| |||||||||||||||||||
Sbjct: 1  gtcctctttgtattcttccacagctttcttgaactgcat 39



 Score = 58.0 bits (29), Expect = 3e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 187 ttgcggttcaataaagctgtgggaagata 215
           |||||||||||||||||||||||||||||
Sbjct: 71  ttgcggttcaataaagctgtgggaagata 99




>41242_csi-MIR396b:mirbase
          Length = 134

 Score = 67.9 bits (34), Expect = 3e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 186 gttgcggttcaataaagctgtgggaagatacaaa 219
           ||||||||||||||||||||||||||||||||||
Sbjct: 81  gttgcggttcaataaagctgtgggaagatacaaa 114



 Score = 63.9 bits (32), Expect = 5e-11
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                      
Query: 10 tatggtcctctttgtattcttcctcagctttcttgaactgcatc 53
          |||| ||||||||||||| |||| ||||||||||||||||||||
Sbjct: 1  tatgatcctctttgtatttttccacagctttcttgaactgcatc 44




>41058_ghr-MIR396b:mirbase
          Length = 135

 Score = 67.9 bits (34), Expect = 3e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 186 gttgcggttcaataaagctgtgggaagatacaaa 219
           ||||||||||||||||||||||||||||||||||
Sbjct: 101 gttgcggttcaataaagctgtgggaagatacaaa 134



 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 23 gtattcttcctcagctttcttgaactgca 51
          |||||||||| ||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaactgca 33




>41057_ghr-MIR396a:mirbase
          Length = 136

 Score = 67.9 bits (34), Expect = 3e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 186 gttgcggttcaataaagctgtgggaagatacaaa 219
           ||||||||||||||||||||||||||||||||||
Sbjct: 101 gttgcggttcaataaagctgtgggaagatacaaa 134



 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 23 gtattcttcctcagctttcttgaactgca 51
          |||||||||| ||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaactgca 33




>41435_ptc-MIR396a:mirbase
          Length = 123

 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 186 gttgcggttcaataaagctgtgggaagatacaa 218
           |||||||||||||||||||||||||||||||||
Sbjct: 91  gttgcggttcaataaagctgtgggaagatacaa 123



 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 23 gtattcttcctcagctttcttgaactgca 51
          |||||||||| ||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaactgca 33




>40473_gma-MIR396a:mirbase
          Length = 140

 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 17 ctctttgtattcttcctcagctttcttgaactgcatc 53
          |||||||||||||||| ||||||||||||||||||||
Sbjct: 9  ctctttgtattcttccacagctttcttgaactgcatc 45



 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 187 ttgcggttcaataaagctgtgggaagatacaaatagg 223
           ||||||||||||||||||||||||||||||| |||||
Sbjct: 98  ttgcggttcaataaagctgtgggaagatacagatagg 134




>41139_tcc-MIR396b:mirbase
          Length = 151

 Score = 63.9 bits (32), Expect = 5e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                  
Query: 11 atggtcctctttgtattcttcctcagctttcttgaactgc 50
          |||| ||||||||||||||||| |||||||||||||||||
Sbjct: 3  atggccctctttgtattcttccacagctttcttgaactgc 42



 Score = 54.0 bits (27), Expect = 5e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 186 gttgcggttcaataaagctgtgggaagatac 216
           ||||| |||||||||||||||||||||||||
Sbjct: 107 gttgcagttcaataaagctgtgggaagatac 137




>41663_vvi-MIR396d:mirbase
          Length = 120

 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 186 gttgcggttcaataaagctgtgggaagatac 216
           |||||||||||||||||||||||||||||||
Sbjct: 84  gttgcggttcaataaagctgtgggaagatac 114



 Score = 60.0 bits (30), Expect = 8e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 19 ctttgtattcttcctcagctttcttgaactgcat 52
          |||||||||||||| |||||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgcat 34




>41436_ptc-MIR396b:mirbase
          Length = 132

 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 188 tgcggttcaataaagctgtgggaagatacaa 218
           |||||||||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagatacaa 132



 Score = 58.0 bits (29), Expect = 3e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 19 ctttgtattcttcctcagctttcttgaactgca 51
          |||||||||||||| ||||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgca 33




>40085_ath-MIR396a:mirbase
          Length = 151

 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 187 ttgcggttcaataaagctgtgggaagataca 217
           |||||||||||||||||||||||||||||||
Sbjct: 118 ttgcggttcaataaagctgtgggaagataca 148



 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 22 tgtattcttcctcagctttcttgaactgca 51
          ||||||||||| ||||||||||||||||||
Sbjct: 4  tgtattcttccacagctttcttgaactgca 33




>39877_aly-MIR396a:mirbase
          Length = 172

 Score = 60.0 bits (30), Expect = 8e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 187 ttgcggttcaataaagctgtgggaagatac 216
           ||||||||||||||||||||||||||||||
Sbjct: 128 ttgcggttcaataaagctgtgggaagatac 157



 Score = 56.0 bits (28), Expect = 1e-08
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 16 cctctttgtattcttcctcagctttcttgaactgca 51
          ||||| ||||||||||| ||||||||||||||||||
Sbjct: 11 cctctctgtattcttccacagctttcttgaactgca 46




>40727_mtr-MIR396b:mirbase
          Length = 95

 Score = 58.0 bits (29), Expect = 3e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 187 ttgcggttcaataaagctgtgggaagata 215
           |||||||||||||||||||||||||||||
Sbjct: 67  ttgcggttcaataaagctgtgggaagata 95



 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 24 tattcttcctcagctttcttgaactgcatc 53
          ||||||||| ||||||||||||||||||||
Sbjct: 1  tattcttccacagctttcttgaactgcatc 30




>42814_zma-MIR396h:mirbase
          Length = 124

 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 18  tctttgtattcttcctcagctttcttgaactgcatct 54
           |||||||  |||||| |||||||||||||||||||||
Sbjct: 109 tctttgtgatcttccacagctttcttgaactgcatct 73



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 192 gttcaataaagctgtgggaa 211
           ||||||||||||||||||||
Sbjct: 20  gttcaataaagctgtgggaa 1




>42808_zma-MIR396b:mirbase
          Length = 136

 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 18 tctttgtattcttcctcagctttcttgaactgcatct 54
          |||||||  |||||| |||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatct 46



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 192 gttcaataaagctgtgggaa 211
           ||||||||||||||||||||
Sbjct: 99  gttcaataaagctgtgggaa 118




>42583_sbi-MIR396b:mirbase
          Length = 128

 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 18 tctttgtattcttcctcagctttcttgaactgcatct 54
          |||||||  |||||| |||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatct 46



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 192 gttcaataaagctgtgggaa 211
           ||||||||||||||||||||
Sbjct: 91  gttcaataaagctgtgggaa 110




>42461_sof-MIR396:mirbase
          Length = 134

 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 18 tctttgtattcttcctcagctttcttgaactgcatct 54
          |||||||  |||||| |||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatct 46



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 192 gttcaataaagctgtgggaa 211
           ||||||||||||||||||||
Sbjct: 97  gttcaataaagctgtgggaa 116




>42027_osa-MIR396b:mirbase
          Length = 116

 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 27 tcttcctcagctttcttgaactgcatctt 55
          |||||| ||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcatctt 37



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 192 gttcaataaagctgtgggaa 211
           ||||||||||||||||||||
Sbjct: 88  gttcaataaagctgtgggaa 107




>41241_csi-MIR396a:mirbase
          Length = 153

 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 13 ggtcctctttgtattcttcctcagctttcttgaactg 49
          ||||||||||||  |||||| ||||||||||||||||
Sbjct: 5  ggtcctctttgtgatcttccacagctttcttgaactg 41




>41188_aqc-MIR396a:mirbase
          Length = 122

 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 187 ttgcggttcaataaagctgtgggaa 211
           |||||||||||||||||||||||||
Sbjct: 97  ttgcggttcaataaagctgtgggaa 121



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 29 ttcctcagctttcttgaactgcat 52
          |||| |||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcat 24




>41794_bdi-MIR396d:mirbase
          Length = 152

 Score = 48.1 bits (24), Expect = 3e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 27 tcttcctcagctttcttgaactgcatct 54
          |||||| |||||||||||||||||||||
Sbjct: 31 tcttccacagctttcttgaactgcatct 58



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 192 gttcaataaagctgtgggaa 211
           ||||||||||||||||||||
Sbjct: 101 gttcaataaagctgtgggaa 120




>42813_zma-MIR396g:mirbase
          Length = 114

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 27  tcttcctcagctttcttgaactgcatc 53
           |||||| ||||||||||||||||||||
Sbjct: 113 tcttccacagctttcttgaactgcatc 87



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 192 gttcaataaagctgtgggaa 211
           ||||||||||||||||||||
Sbjct: 20  gttcaataaagctgtgggaa 1




>42807_zma-MIR396a:mirbase
          Length = 137

 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 27 tcttcctcagctttcttgaactgcat 52
          |||||| |||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 192 gttcaataaagctgtgggaa 211
           ||||||||||||||||||||
Sbjct: 100 gttcaataaagctgtgggaa 119




>42582_sbi-MIR396a:mirbase
          Length = 125

 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 27 tcttcctcagctttcttgaactgcat 52
          |||||| |||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 192 gttcaataaagctgtgggaa 211
           ||||||||||||||||||||
Sbjct: 88  gttcaataaagctgtgggaa 107




>42472_ssp-MIR396:mirbase
          Length = 95

 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 29 ttcctcagctttcttgaactgcatct 54
          |||| |||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatct 26




>42026_osa-MIR396a:mirbase
          Length = 154

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 27 tcttcctcagctttcttgaactgca 51
          |||||| ||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgca 33



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 192 gttcaataaagctgtgggaa 211
           ||||||||||||||||||||
Sbjct: 126 gttcaataaagctgtgggaa 145




>41793_bdi-MIR396c:mirbase
          Length = 153

 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 27 tcttcctcagctttcttgaactgc 50
          |||||| |||||||||||||||||
Sbjct: 31 tcttccacagctttcttgaactgc 54



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 192 gttcaataaagctgtgggaa 211
           ||||||||||||||||||||
Sbjct: 102 gttcaataaagctgtgggaa 121