miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>41244_csi-MIR397:mirbase
          Length = 156

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 2  aaaaaacctcattgagtgcagcgttgatga 31
          ||||||| ||||||||||||||||||||||
Sbjct: 10 aaaaaacatcattgagtgcagcgttgatga 39




>41664_vvi-MIR397a:mirbase
          Length = 118

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 4  aaaacctcattgagtgcagcgttgatga 31
          ||||| ||||||||||||||||||||||
Sbjct: 5  aaaacatcattgagtgcagcgttgatga 32




>40380_rco-MIR397:mirbase
          Length = 157

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 5  aaacctcattgagtgcagcgttgatga 31
          |||| ||||||||||||||||||||||
Sbjct: 1  aaacatcattgagtgcagcgttgatga 27




>42587_sbi-MIR397:mirbase
          Length = 91

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 tcattgagtgcagcgttgatga 31
          ||||||||||||||||||||||
Sbjct: 1  tcattgagtgcagcgttgatga 22




>42037_osa-MIR397a:mirbase
          Length = 114

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 tcattgagtgcagcgttgatga 31
          ||||||||||||||||||||||
Sbjct: 11 tcattgagtgcagcgttgatga 32




>41798_bdi-MIR397b:mirbase
          Length = 292

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 tcattgagtgcagcgttgatga 31
          ||||||||||||||||||||||
Sbjct: 32 tcattgagtgcagcgttgatga 53



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 10  tcattgagtgcagcgttgatga 31
           ||||||||||||||||||||||
Sbjct: 178 tcattgagtgcagcgttgatga 199




>41797_bdi-MIR397a:mirbase
          Length = 124

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 tcattgagtgcagcgttgatga 31
          ||||||||||||||||||||||
Sbjct: 18 tcattgagtgcagcgttgatga 39




>41442_ptc-MIR397a:mirbase
          Length = 120

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 tcattgagtgcagcgttgatga 31
          ||||||||||||||||||||||
Sbjct: 11 tcattgagtgcagcgttgatga 32




>41143_tcc-MIR397:mirbase
          Length = 123

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 tcattgagtgcagcgttgatga 31
          ||||||||||||||||||||||
Sbjct: 21 tcattgagtgcagcgttgatga 42




>39880_aly-MIR397b:mirbase
          Length = 131

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 5  aaacctcattgagtgcagcgttgatg 30
          |||| |||||||||||||||||||||
Sbjct: 14 aaacatcattgagtgcagcgttgatg 39




>41443_ptc-MIR397b:mirbase
          Length = 114

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 cattgagtgcagcgttgatga 31
          |||||||||||||||||||||
Sbjct: 12 cattgagtgcagcgttgatga 32




>40298_bna-MIR397b:mirbase
          Length = 96

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tcattgagtgcagcgttgatg 30
          |||||||||||||||||||||
Sbjct: 6  tcattgagtgcagcgttgatg 26




>40297_bna-MIR397a:mirbase
          Length = 96

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tcattgagtgcagcgttgatg 30
          |||||||||||||||||||||
Sbjct: 6  tcattgagtgcagcgttgatg 26




>40087_ath-MIR397a:mirbase
          Length = 107

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tcattgagtgcagcgttgatg 30
          |||||||||||||||||||||
Sbjct: 11 tcattgagtgcagcgttgatg 31




>39879_aly-MIR397a:mirbase
          Length = 126

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tcattgagtgcagcgttgatg 30
          |||||||||||||||||||||
Sbjct: 20 tcattgagtgcagcgttgatg 40




>42038_osa-MIR397b:mirbase
          Length = 118

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 attgagtgcagcgttgatga 31
          ||||||||||||||||||||
Sbjct: 13 attgagtgcagcgttgatga 32




>41547_sly-MIR397:mirbase
          Length = 116

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 attgagtgcagcgttgatga 31
          ||||||||||||||||||||
Sbjct: 20 attgagtgcagcgttgatga 39




>39382_pab-MIR397:mirbase
          Length = 134

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 10 tcattgagtgcagcgttgatgata 33
          ||||||||||||||||||| ||||
Sbjct: 17 tcattgagtgcagcgttgacgata 40