miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>40340_rco-MIR160b:mirbase
          Length = 96

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 65  ccatggattggcaactgcggctggcgtgtgaggagccaagcatac 109
           |||||||||||| | ||| | ||||||| ||||||||||||||||
Sbjct: 48  ccatggattggctattgccggtggcgtgcgaggagccaagcatac 92




>41312_ptc-MIR160h:mirbase
          Length = 98

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 tgtgcctggctccctgcatgcca 42
          |||||||||||||||||||||||
Sbjct: 9  tgtgcctggctccctgcatgcca 31




>42703_zma-MIR160c:mirbase
          Length = 100

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 20 tgtgcctggctccctgcatgccactc 45
          |||||||||||||||| |||||||||
Sbjct: 5  tgtgcctggctccctgtatgccactc 30




>42677_ttu-MIR160:mirbase
          Length = 100

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 20 tgtgcctggctccctgcatgccactc 45
          |||||||||||||||| |||||||||
Sbjct: 7  tgtgcctggctccctgtatgccactc 32




>41926_osa-MIR160d:mirbase
          Length = 142

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 78  actgcggctggcgtgtgaggagccaagcat 107
           ||||||| ||||||| ||||||||||||||
Sbjct: 109 actgcggatggcgtgcgaggagccaagcat 138



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 22 tgcctggctccctgcatgccactcg 46
          |||||||||||||| ||||||||||
Sbjct: 8  tgcctggctccctgtatgccactcg 32




>41925_osa-MIR160c:mirbase
          Length = 99

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 20 tgtgcctggctccctgcatgccactc 45
          |||||||||||||||| |||||||||
Sbjct: 5  tgtgcctggctccctgtatgccactc 30




>41734_bdi-MIR160d:mirbase
          Length = 150

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 20 tgtgcctggctccctgcatgccactc 45
          |||||||||||||||| |||||||||
Sbjct: 29 tgtgcctggctccctgtatgccactc 54




>41575_vvi-MIR160c:mirbase
          Length = 106

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 80  tgcggctggcgtgtgaggagccaagcatac 109
           ||||| ||||||| ||||||||||||||||
Sbjct: 68  tgcgggtggcgtgcgaggagccaagcatac 97



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 20 tgtgcctggctccctgcatgccactcgta 48
          |||||||||||||||| ||||||| ||||
Sbjct: 9  tgtgcctggctccctgtatgccacacgta 37




>39457_ppt-MIR160c:mirbase
          Length = 100

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 23 gcctggctccctgcatgccact 44
          ||||||||||||||||||||||
Sbjct: 12 gcctggctccctgcatgccact 33




>42705_zma-MIR160e:mirbase
          Length = 94

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 22 tgcctggctccctgcatgccactcg 46
          |||||||||||||| ||||||||||
Sbjct: 9  tgcctggctccctgtatgccactcg 33



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 79  ctgcggctggcgtgtgaggagccaagcat 107
           |||||||||||||| |||| |||||||||
Sbjct: 59  ctgcggctggcgtgcgaggtgccaagcat 87




>42704_zma-MIR160d:mirbase
          Length = 142

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 22 tgcctggctccctgcatgccactcg 46
          |||||||||||||| ||||||||||
Sbjct: 21 tgcctggctccctgtatgccactcg 45




>42636_tae-MIR160:mirbase
          Length = 148

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 22 tgcctggctccctgcatgccactcg 46
          |||||||||||||| ||||||||||
Sbjct: 22 tgcctggctccctgtatgccactcg 46




>42500_sbi-MIR160e:mirbase
          Length = 95

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 22 tgcctggctccctgcatgccactcg 46
          |||||||||||||| ||||||||||
Sbjct: 1  tgcctggctccctgtatgccactcg 25



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 79  ctgcggctggcgtgtgaggagccaagca 106
           |||||||||||||| |||| ||||||||
Sbjct: 68  ctgcggctggcgtgcgaggtgccaagca 95




>42499_sbi-MIR160d:mirbase
          Length = 100

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 22 tgcctggctccctgcatgccactcg 46
          |||||||||||||| ||||||||||
Sbjct: 1  tgcctggctccctgtatgccactcg 25



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 78  actgcggctggcgtgtgaggagccaagca 106
           ||||||| ||||||| |||||||||||||
Sbjct: 72  actgcggatggcgtgcgaggagccaagca 100




>41924_osa-MIR160b:mirbase
          Length = 139

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 21 gtgcctggctccctgcatgccactc 45
          ||||||||||||||| |||||||||
Sbjct: 29 gtgcctggctccctgtatgccactc 53




>41733_bdi-MIR160c:mirbase
          Length = 148

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 19 ctgtgcctggctccctgcatgccac 43
          ||||||||||||||||| |||||||
Sbjct: 28 ctgtgcctggctccctgtatgccac 52




>41731_bdi-MIR160a:mirbase
          Length = 175

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 22 tgcctggctccctgcatgccactcg 46
          |||||||||||||| ||||||||||
Sbjct: 32 tgcctggctccctgtatgccactcg 56




>42702_zma-MIR160b:mirbase
          Length = 121

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 20 tgtgcctggctccctgcatgccac 43
          |||||||||||||||| |||||||
Sbjct: 19 tgtgcctggctccctgtatgccac 42




>42498_sbi-MIR160c:mirbase
          Length = 83

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 22 tgcctggctccctgcatgccactc 45
          |||||||||||||| |||||||||
Sbjct: 1  tgcctggctccctgtatgccactc 24




>41923_osa-MIR160a:mirbase
          Length = 88

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 20 tgtgcctggctccctgcatgccac 43
          |||||||||||||||| |||||||
Sbjct: 2  tgtgcctggctccctgtatgccac 25




>41308_ptc-MIR160d:mirbase
          Length = 103

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 86  tggcgtgtgaggagccaagcatac 109
           ||||||| ||||||||||||||||
Sbjct: 75  tggcgtgcgaggagccaagcatac 98




>41305_ptc-MIR160a:mirbase
          Length = 102

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 86  tggcgtgtgaggagccaagcatac 109
           ||||||| ||||||||||||||||
Sbjct: 74  tggcgtgcgaggagccaagcatac 97




>39374_pab-MIR160a:mirbase
          Length = 106

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 20 tgtgcctggctccctgcatgccac 43
          |||||||||||||||| |||||||
Sbjct: 12 tgtgcctggctccctgtatgccac 35