miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>40085_ath-MIR396a:mirbase
          Length = 151

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 84  tttgcggttcaataaagctgtgggaagatagagac 118
           |||||||||||||||||||||||||||||| ||||
Sbjct: 117 tttgcggttcaataaagctgtgggaagatacagac 151



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 16 tattcttccacggctttcttgaactgca 43
          ||||||||||| ||||||||||||||||
Sbjct: 6  tattcttccacagctttcttgaactgca 33




>40727_mtr-MIR396b:mirbase
          Length = 95

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 84  tttgcggttcaataaagctgtgggaagata 113
           ||||||||||||||||||||||||||||||
Sbjct: 66  tttgcggttcaataaagctgtgggaagata 95



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 16 tattcttccacggctttcttgaactgcat 44
          ||||||||||| |||||||||||||||||
Sbjct: 1  tattcttccacagctttcttgaactgcat 29




>40646_lja-MIR396:mirbase
          Length = 108

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 84  tttgcggttcaataaagctgtgggaagata 113
           ||||||||||||||||||||||||||||||
Sbjct: 70  tttgcggttcaataaagctgtgggaagata 99



 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 9  ctctttctattcttccacggctttcttgaactgcat 44
          |||||| ||||||||||| |||||||||||||||||
Sbjct: 4  ctctttgtattcttccacagctttcttgaactgcat 39




>40473_gma-MIR396a:mirbase
          Length = 140

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 84  tttgcggttcaataaagctgtgggaagata 113
           ||||||||||||||||||||||||||||||
Sbjct: 97  tttgcggttcaataaagctgtgggaagata 126



 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 9  ctctttctattcttccacggctttcttgaactgcat 44
          |||||| ||||||||||| |||||||||||||||||
Sbjct: 9  ctctttgtattcttccacagctttcttgaactgcat 44




>39877_aly-MIR396a:mirbase
          Length = 172

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 84  tttgcggttcaataaagctgtgggaagata 113
           ||||||||||||||||||||||||||||||
Sbjct: 127 tttgcggttcaataaagctgtgggaagata 156



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 16 tattcttccacggctttcttgaactgca 43
          ||||||||||| ||||||||||||||||
Sbjct: 19 tattcttccacagctttcttgaactgca 46




>41663_vvi-MIR396d:mirbase
          Length = 120

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 85  ttgcggttcaataaagctgtgggaagata 113
           |||||||||||||||||||||||||||||
Sbjct: 85  ttgcggttcaataaagctgtgggaagata 113



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 11 ctttctattcttccacggctttcttgaactgcat 44
          |||| ||||||||||| |||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgcat 34




>41435_ptc-MIR396a:mirbase
          Length = 123

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 85  ttgcggttcaataaagctgtgggaagata 113
           |||||||||||||||||||||||||||||
Sbjct: 92  ttgcggttcaataaagctgtgggaagata 120



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 16 tattcttccacggctttcttgaactgca 43
          ||||||||||| ||||||||||||||||
Sbjct: 6  tattcttccacagctttcttgaactgca 33




>41242_csi-MIR396b:mirbase
          Length = 134

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 85  ttgcggttcaataaagctgtgggaagata 113
           |||||||||||||||||||||||||||||
Sbjct: 82  ttgcggttcaataaagctgtgggaagata 110



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 9  ctctttctattcttccacggctttcttgaactgcat 44
          |||||| |||| |||||| |||||||||||||||||
Sbjct: 8  ctctttgtatttttccacagctttcttgaactgcat 43




>41058_ghr-MIR396b:mirbase
          Length = 135

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 85  ttgcggttcaataaagctgtgggaagata 113
           |||||||||||||||||||||||||||||
Sbjct: 102 ttgcggttcaataaagctgtgggaagata 130



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 16 tattcttccacggctttcttgaactgca 43
          ||||||||||| ||||||||||||||||
Sbjct: 6  tattcttccacagctttcttgaactgca 33




>41057_ghr-MIR396a:mirbase
          Length = 136

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 85  ttgcggttcaataaagctgtgggaagata 113
           |||||||||||||||||||||||||||||
Sbjct: 102 ttgcggttcaataaagctgtgggaagata 130



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 16 tattcttccacggctttcttgaactgca 43
          ||||||||||| ||||||||||||||||
Sbjct: 6  tattcttccacagctttcttgaactgca 33




>41436_ptc-MIR396b:mirbase
          Length = 132

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 86  tgcggttcaataaagctgtgggaagata 113
           ||||||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagata 129



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 11 ctttctattcttccacggctttcttgaactgca 43
          |||| ||||||||||| ||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgca 33




>41188_aqc-MIR396a:mirbase
          Length = 122

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 83  ctttgcggttcaataaagctgtgggaa 109
           |||||||||||||||||||||||||||
Sbjct: 95  ctttgcggttcaataaagctgtgggaa 121



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 21 ttccacggctttcttgaactgcatgg 46
          |||||| |||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatgg 26




>41139_tcc-MIR396b:mirbase
          Length = 151

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 9  ctctttctattcttccacggctttcttgaactgc 42
          |||||| ||||||||||| |||||||||||||||
Sbjct: 9  ctctttgtattcttccacagctttcttgaactgc 42



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 85  ttgcggttcaataaagctgtgggaagata 113
           |||| ||||||||||||||||||||||||
Sbjct: 108 ttgcagttcaataaagctgtgggaagata 136




>42807_zma-MIR396a:mirbase
          Length = 137

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 19 tcttccacggctttcttgaactgcatg 45
          |||||||| ||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcatg 45



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  gttcaataaagctgtgggaa 109
           ||||||||||||||||||||
Sbjct: 100 gttcaataaagctgtgggaa 119




>42582_sbi-MIR396a:mirbase
          Length = 125

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 19 tcttccacggctttcttgaactgcatg 45
          |||||||| ||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcatg 45



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  gttcaataaagctgtgggaa 109
           ||||||||||||||||||||
Sbjct: 88  gttcaataaagctgtgggaa 107




>42814_zma-MIR396h:mirbase
          Length = 124

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 19  tcttccacggctttcttgaactgcat 44
           |||||||| |||||||||||||||||
Sbjct: 100 tcttccacagctttcttgaactgcat 75



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 90  gttcaataaagctgtgggaa 109
           ||||||||||||||||||||
Sbjct: 20  gttcaataaagctgtgggaa 1




>42813_zma-MIR396g:mirbase
          Length = 114

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 19  tcttccacggctttcttgaactgcat 44
           |||||||| |||||||||||||||||
Sbjct: 113 tcttccacagctttcttgaactgcat 88



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 90  gttcaataaagctgtgggaa 109
           ||||||||||||||||||||
Sbjct: 20  gttcaataaagctgtgggaa 1




>42808_zma-MIR396b:mirbase
          Length = 136

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 19 tcttccacggctttcttgaactgcat 44
          |||||||| |||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  gttcaataaagctgtgggaa 109
           ||||||||||||||||||||
Sbjct: 99  gttcaataaagctgtgggaa 118




>42583_sbi-MIR396b:mirbase
          Length = 128

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 19 tcttccacggctttcttgaactgcat 44
          |||||||| |||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  gttcaataaagctgtgggaa 109
           ||||||||||||||||||||
Sbjct: 91  gttcaataaagctgtgggaa 110




>42461_sof-MIR396:mirbase
          Length = 134

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 19 tcttccacggctttcttgaactgcat 44
          |||||||| |||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  gttcaataaagctgtgggaa 109
           ||||||||||||||||||||
Sbjct: 97  gttcaataaagctgtgggaa 116




>42027_osa-MIR396b:mirbase
          Length = 116

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 19 tcttccacggctttcttgaactgcat 44
          |||||||| |||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcat 34



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  gttcaataaagctgtgggaa 109
           ||||||||||||||||||||
Sbjct: 88  gttcaataaagctgtgggaa 107




>41794_bdi-MIR396d:mirbase
          Length = 152

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 19 tcttccacggctttcttgaactgcat 44
          |||||||| |||||||||||||||||
Sbjct: 31 tcttccacagctttcttgaactgcat 56



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  gttcaataaagctgtgggaa 109
           ||||||||||||||||||||
Sbjct: 101 gttcaataaagctgtgggaa 120




>42026_osa-MIR396a:mirbase
          Length = 154

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 19 tcttccacggctttcttgaactgca 43
          |||||||| ||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgca 33



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  gttcaataaagctgtgggaa 109
           ||||||||||||||||||||
Sbjct: 126 gttcaataaagctgtgggaa 145




>41440_ptc-MIR396f:mirbase
          Length = 127

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 ttccacggctttcttgaactg 41
          |||||||||||||||||||||
Sbjct: 11 ttccacggctttcttgaactg 31




>39381_pab-MIR396c:mirbase
          Length = 143

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 16 tattcttccacggctttcttgaact 40
          |||| ||||||||||||||||||||
Sbjct: 20 tatttttccacggctttcttgaact 44




>42472_ssp-MIR396:mirbase
          Length = 95

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 21 ttccacggctttcttgaactgcat 44
          |||||| |||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcat 24




>41793_bdi-MIR396c:mirbase
          Length = 153

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 19 tcttccacggctttcttgaactgc 42
          |||||||| |||||||||||||||
Sbjct: 31 tcttccacagctttcttgaactgc 54



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  gttcaataaagctgtgggaa 109
           ||||||||||||||||||||
Sbjct: 102 gttcaataaagctgtgggaa 121




>41441_ptc-MIR396g:mirbase
          Length = 168

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacggctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 11 ttccacggctttcttgaact 30




>41437_ptc-MIR396c:mirbase
          Length = 102

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 21 ttccacggctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 94 ttccacggctttcttgaact 75




>41142_tcc-MIR396e:mirbase
          Length = 146

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 21  ttccacggctttcttgaact 40
           ||||||||||||||||||||
Sbjct: 124 ttccacggctttcttgaact 105




>41141_tcc-MIR396d:mirbase
          Length = 182

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacggctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 21 ttccacggctttcttgaact 40




>39380_pab-MIR396b:mirbase
          Length = 116

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacggctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 9  ttccacggctttcttgaact 28