miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>39392_pab-MIR1311:mirbase
          Length = 88

 Score =  174 bits (88), Expect = 9e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                       
Query: 14  gggcttggtaggattaggcgcactggcataactctgaccatagtttatggtcagagtttt 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gggcttggtaggattaggcgcactggcataactctgaccatagtttatggtcagagtttt 60

                                       
Query: 74  gccagttccgcccattcctattgtgcct 101
           ||||||||||||||||||||||||||||
Sbjct: 61  gccagttccgcccattcctattgtgcct 88



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                       
Query: 35 actggcataactctgaccatagtttatggtcagagttttgccagt 79
          ||||||| |||||||||||||   ||||||||||||| |||||||
Sbjct: 66 actggcaaaactctgaccataaactatggtcagagttatgccagt 22




>39446_pta-MIR1311:mirbase
          Length = 86

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 60 atggtcagagttttgccagttccgcccattccta 93
          ||||||||||||||||||||||||||||||||||
Sbjct: 50 atggtcagagttttgccagttccgcccattccta 83