miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41890_hvu-MIR171:mirbase
Length = 173
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatcttagttctctttcat 113
|||||||||||||||||||||||||| |||||||||
Sbjct: 112 tgattgagccgtgccaatatcttagtgctctttcat 147
>42765_zma-MIR171e:mirbase
Length = 126
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatcttagttctctt 109
|||||||||||||||||||||||||| |||||
Sbjct: 87 tgattgagccgtgccaatatcttagtactctt 118
>42764_zma-MIR171d:mirbase
Length = 121
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatcttagttctctttcat 113
|||||||||||||||||||||| ||| |||||||||
Sbjct: 82 tgattgagccgtgccaatatctcagtactctttcat 117
>42640_tae-MIR171a:mirbase
Length = 130
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatcttagttctctttcat 113
|||||||||||||||||||||| ||| |||||||||
Sbjct: 89 tgattgagccgtgccaatatctcagtgctctttcat 124
>41123_tcc-MIR171h:mirbase
Length = 135
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatcttagttctctttcat 113
||||||||||||||||||||||||| |||||||||
Sbjct: 95 tgattgagccgtgccaatatcttagaactctttcat 130
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 31 tgatattggcctggttcactcagaca 56
||||||||||||||||||||||||||
Sbjct: 20 tgatattggcctggttcactcagaca 45
>40362_rco-MIR171d:mirbase
Length = 124
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatcttagt 103
||||||||||||||||||||||||||||
Sbjct: 97 tttgattgagccgtgccaatatcttagt 124
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 tgatattggcctggttcactcagacaaaa 59
|||| |||||| |||||||||||||||||
Sbjct: 3 tgatgttggcccggttcactcagacaaaa 31
>41985_osa-MIR171e:mirbase
Length = 119
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatcttagttctct 108
|||||||||||||||||||||||||| ||||
Sbjct: 89 tgattgagccgtgccaatatcttagtgctct 119
>41538_sly-MIR171a:mirbase
Length = 122
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 tgatattggcctggttcactcagacaa 57
|||||||||||||||||||||||||||
Sbjct: 15 tgatattggcctggttcactcagacaa 41
Score = 52.0 bits (26), Expect = 1e-07
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatcttag-ttctctttca 112
|||||||||||||||||||||||| || ||||||||||
Sbjct: 85 tttgattgagccgtgccaatatctcagtttctctttca 122
>41389_ptc-MIR171i:mirbase
Length = 129
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 28 ctatgatattggcctggttcactcaga 54
|||||||||||||||||||||||||||
Sbjct: 7 ctatgatattggcctggttcactcaga 33
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 75 atttgattgagccgtgccaatatct 99
|||||||||||||||||||||||||
Sbjct: 97 atttgattgagccgtgccaatatct 121
>41386_ptc-MIR171f:mirbase
Length = 130
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatcttagt 103
||||||||||||||||||||||||||
Sbjct: 101 tgattgagccgtgccaatatcttagt 126
>40364_rco-MIR171f:mirbase
Length = 111
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 31 tgatattggcctggttcactcagaca 56
||||||||||||||||||||||||||
Sbjct: 3 tgatattggcctggttcactcagaca 28
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatct 99
||||||||||||||||||||||||
Sbjct: 84 tttgattgagccgtgccaatatct 107
>41180_aqc-MIR171d:mirbase
Length = 106
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatctt 100
|||||||||||||||||||||||||
Sbjct: 82 tttgattgagccgtgccaatatctt 106
>41177_aqc-MIR171a:mirbase
Length = 102
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatctt 100
|||||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatctt 102
>42549_sbi-MIR171d:mirbase
Length = 153
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatcttagttctctt 109
|||||||||||||||||||||| ||| |||||
Sbjct: 114 tgattgagccgtgccaatatctcagtactctt 145
>41121_tcc-MIR171f:mirbase
Length = 117
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 atttgattgagccgtgccaatatc 98
||||||||||||||||||||||||
Sbjct: 74 atttgattgagccgtgccaatatc 97
>41120_tcc-MIR171e:mirbase
Length = 161
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatcttagt 103
||||||||||||||||||||||| ||||
Sbjct: 119 tttgattgagccgtgccaatatcctagt 146
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ggttcactcagacaaaatca 62
||||||||||||||||||||
Sbjct: 32 ggttcactcagacaaaatca 51
>41119_tcc-MIR171d:mirbase
Length = 117
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 atttgattgagccgtgccaatatc 98
||||||||||||||||||||||||
Sbjct: 74 atttgattgagccgtgccaatatc 97
>40701_mtr-MIR171g:mirbase
Length = 105
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 gatattggcctggttcactcagac 55
||||||||||||||||||||||||
Sbjct: 6 gatattggcctggttcactcagac 29
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatct 99
||||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatct 101
>40700_mtr-MIR171f:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 atttgattgagccgtgccaatatc 98
||||||||||||||||||||||||
Sbjct: 64 atttgattgagccgtgccaatatc 87
>40698_mtr-MIR171d:mirbase
Length = 105
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 gatattggcctggttcactcagac 55
||||||||||||||||||||||||
Sbjct: 6 gatattggcctggttcactcagac 29
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatct 99
||||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatct 101
>40457_gma-MIR171c:mirbase
Length = 104
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 atttgattgagccgtgccaatatc 98
||||||||||||||||||||||||
Sbjct: 69 atttgattgagccgtgccaatatc 92
>40322_bra-MIR171e:mirbase
Length = 119
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tgatattggcctggttcactcaga 54
||||||||||||||||||||||||
Sbjct: 17 tgatattggcctggttcactcaga 40
>40290_bna-MIR171f:mirbase
Length = 119
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tgatattggcctggttcactcaga 54
||||||||||||||||||||||||
Sbjct: 17 tgatattggcctggttcactcaga 40
>40062_ath-MIR171c:mirbase
Length = 116
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 atttgattgagccgtgccaatatc 98
||||||||||||||||||||||||
Sbjct: 84 atttgattgagccgtgccaatatc 107
>40060_ath-MIR171a:mirbase
Length = 123
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tgatattggcctggttcactcaga 54
||||||||||||||||||||||||
Sbjct: 16 tgatattggcctggttcactcaga 39
>40059_ath-MIR170:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tgatattggcctggttcactcaga 54
||||||||||||||||||||||||
Sbjct: 15 tgatattggcctggttcactcaga 38
>39849_aly-MIR171a:mirbase
Length = 198
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tgatattggcctggttcactcaga 54
||||||||||||||||||||||||
Sbjct: 56 tgatattggcctggttcactcaga 79
>39848_aly-MIR170:mirbase
Length = 212
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tgatattggcctggttcactcaga 54
||||||||||||||||||||||||
Sbjct: 74 tgatattggcctggttcactcaga 97
>42762_zma-MIR171b:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatc 82
>42556_sbi-MIR171k:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatc 82
>42554_sbi-MIR171i:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatctt 100
|||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatctt 90
>42546_sbi-MIR171a:mirbase
Length = 161
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 120 tttgattgagccgtgccaatatc 142
>41983_osa-MIR171c:mirbase
Length = 99
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatc 89
>41982_osa-MIR171b:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatc 90
>41766_bdi-MIR171c:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 62 tttgattgagccgtgccaatatc 84
>41625_vvi-MIR171d:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatc 87
>41624_vvi-MIR171c:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatc 90
>41382_ptc-MIR171b:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 69 tttgattgagccgtgccaatatc 91
>41381_ptc-MIR171a:mirbase
Length = 104
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatc 92
>41216_crt-MIR171:mirbase
Length = 201
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 159 tttgattgagccgtgccaatatc 181
>41181_aqc-MIR171e:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 23 tttgattgagccgtgccaatatc 1
>40360_rco-MIR171b:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 61 tttgattgagccgtgccaatatc 83
>40359_rco-MIR171a:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 62 tttgattgagccgtgccaatatc 84
>40318_bra-MIR171a:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatc 82
>40305_bol-MIR171a:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatc 88
>40291_bna-MIR171g:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 gatattggcctggttcactcaga 54
|||||||||||||||||||||||
Sbjct: 1 gatattggcctggttcactcaga 23
>40289_bna-MIR171e:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatc 87
>40288_bna-MIR171d:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatc 88
>39851_aly-MIR171c:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatatc 98
|||||||||||||||||||||||
Sbjct: 72 tttgattgagccgtgccaatatc 94
>42769_zma-MIR171i:mirbase
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttgattgagccgtgccaatatc 98
||||||||||||||||||||||
Sbjct: 64 ttgattgagccgtgccaatatc 85
>42766_zma-MIR171f:mirbase
Length = 155
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttgattgagccgtgccaatatc 98
||||||||||||||||||||||
Sbjct: 114 ttgattgagccgtgccaatatc 135
>41984_osa-MIR171d:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatct 99
||||||||||||||||||||||
Sbjct: 105 tgattgagccgtgccaatatct 126
>40697_mtr-MIR171c:mirbase
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tttgattgagccgtgccaatat 97
||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatat 99
>42770_zma-MIR171j:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgtgccaatatc 98
|||||||||||||||||||||
Sbjct: 90 tgattgagccgtgccaatatc 110
