miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41313_ptc-MIR162a:mirbase
          Length = 107

 Score =  198 bits (100), Expect = 7e-52
 Identities = 107/108 (99%), Gaps = 1/108 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  tgggaagacactnggaggcagcggttcatcgatctcttcctggccaattttttgtttagc 69
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgggaagacact-ggaggcagcggttcatcgatctcttcctggccaattttttgtttagc 59

                                                           
Query: 70  acgaaaaacatgaaccgatcgataaacctctgcatccagcgcttcctt 117
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  acgaaaaacatgaaccgatcgataaacctctgcatccagcgcttcctt 107




>41315_ptc-MIR162c:mirbase
          Length = 107

 Score =  109 bits (55), Expect = 5e-25
 Identities = 92/103 (89%), Gaps = 1/103 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  gaagacactnggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacg 72
           ||||||||| |||||||||||||||||||||| ||||||   | ||||||||||  ||||
Sbjct: 4   gaagacact-ggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacg 62

                                                      
Query: 73  aaaaacatgaaccgatcgataaacctctgcatccagcgcttcc 115
           || |||| |||||||||||||||||||||||||||| ||||||
Sbjct: 63  aacaacacgaaccgatcgataaacctctgcatccagtgcttcc 105




>41314_ptc-MIR162b:mirbase
          Length = 107

 Score =  109 bits (55), Expect = 5e-25
 Identities = 92/103 (89%), Gaps = 1/103 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  gaagacactnggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacg 72
           ||||||||| |||||||||||||||||||||| ||||||   | ||||||||||  ||||
Sbjct: 4   gaagacact-ggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacg 62

                                                      
Query: 73  aaaaacatgaaccgatcgataaacctctgcatccagcgcttcc 115
           || |||| |||||||||||||||||||||||||||| ||||||
Sbjct: 63  aacaacacgaaccgatcgataaacctctgcatccagtgcttcc 105




>41046_ghr-MIR162a:mirbase
          Length = 148

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 87/102 (85%), Gaps = 6/102 (5%)
 Strand = Plus / Plus

                                                                       
Query: 14  aagacactnggaggcagcggttcatcgatctcttcctggccaattttttgtt----tagc 69
           |||||||| |||||||||||||||||||||||||||||   | ||| ||||     || |
Sbjct: 18  aagacact-ggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataac 76

                                                     
Query: 70  acgaaaaacatgaaccgatcgataaacctctgcatccagcgc 111
           || ||| ||||||| |||||||||||||||||||||||||||
Sbjct: 77  ac-aaatacatgaatcgatcgataaacctctgcatccagcgc 117




>40437_gma-MIR162:mirbase
          Length = 102

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 73/86 (84%), Gaps = 4/86 (4%)
 Strand = Plus / Plus

                                                                       
Query: 27  gcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatgaaccg 86
           |||||||||||||||||||||||||    | |  ||||||| ||  | || |||||| ||
Sbjct: 16  gcagcggttcatcgatctcttcctg----aatcgttgtttaacatcagaaccatgaatcg 71

                                     
Query: 87  atcgataaacctctgcatccagcgct 112
           ||||||||||||||||||||||||||
Sbjct: 72  atcgataaacctctgcatccagcgct 97




>39813_aly-MIR162b:mirbase
          Length = 184

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 73  aaaaacatgaaccgatcgataaacctctgcatccagcgctt 113
           |||| |||||| |||||||||||||||||||||||||||||
Sbjct: 98  aaaagcatgaatcgatcgataaacctctgcatccagcgctt 138




>41220_csi-MIR162:mirbase
          Length = 201

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 77  acatgaaccgatcgataaacctctgcatccagcgct 112
           ||||||| ||||||||||||||||||||||||||||
Sbjct: 150 acatgaatcgatcgataaacctctgcatccagcgct 185




>40342_rco-MIR162:mirbase
          Length = 101

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 78  catgaaccgatcgataaacctctgcatccagcgctt 113
           |||||| |||||||||||||||||||||||||||||
Sbjct: 66  catgaatcgatcgataaacctctgcatccagcgctt 101




>41090_tcc-MIR162:mirbase
          Length = 131

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 38/39 (97%), Gaps = 1/39 (2%)
 Strand = Plus / Plus

                                                 
Query: 14 aagacactnggaggcagcggttcatcgatctcttcctgg 52
          |||||||| ||||||||||||||||||||||||||||||
Sbjct: 15 aagacact-ggaggcagcggttcatcgatctcttcctgg 52




>40329_cpa-MIR162a:mirbase
          Length = 109

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 76  aacatgaaccgatcgataaacctctgcatccagcg 110
           |||||||| ||||||||||||||||||||||||||
Sbjct: 68  aacatgaatcgatcgataaacctctgcatccagcg 102



 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 23 ggaggcagcggttcatcgatctcttcctgg 52
          ||||||||||||||||||||||||||||||
Sbjct: 15 ggaggcagcggttcatcgatctcttcctgg 44




>40663_mtr-MIR162:mirbase
          Length = 124

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 75  aaacatgaaccgatcgataaacctctgcatccagcgct 112
           ||||||||| || |||||||||||||||||||||||||
Sbjct: 74  aaacatgaatcggtcgataaacctctgcatccagcgct 111




>39812_aly-MIR162a:mirbase
          Length = 228

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 23 ggaggcagcggttcatcgatctcttcctgg 52
          ||||||||||||||||||||||||||||||
Sbjct: 70 ggaggcagcggttcatcgatctcttcctgg 99



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 73  aaaaacatgaaccgatcgataaacctctgcatccagcg 110
           |||| ||||||  |||||||||||||||||||||||||
Sbjct: 121 aaaagcatgaatagatcgataaacctctgcatccagcg 158




>40024_ath-MIR162a:mirbase
          Length = 140

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 23 ggaggcagcggttcatcgatctcttcctg 51
          |||||||||||||||||||||||||||||
Sbjct: 27 ggaggcagcggttcatcgatctcttcctg 55



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 73  aaaaacatgaaccgatcgataaacctctgcatccagcg 110
           |||| ||||||  |||||||||||||||||||||||||
Sbjct: 74  aaaagcatgaatagatcgataaacctctgcatccagcg 111




>40025_ath-MIR162b:mirbase
          Length = 111

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 85  cgatcgataaacctctgcatccagcgct 112
           ||||||||||||||||||||||||||||
Sbjct: 76  cgatcgataaacctctgcatccagcgct 103



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 ggaggcagcggttcatcgatc 43
          |||||||||||||||||||||
Sbjct: 14 ggaggcagcggttcatcgatc 34




>41578_vvi-MIR162:mirbase
          Length = 103

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 27 gcagcggttcatcgatctcttcctg 51
          |||||||||||||||||||||||||
Sbjct: 15 gcagcggttcatcgatctcttcctg 39



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 88  tcgataaacctctgcatccagcg 110
           |||||||||||||||||||||||
Sbjct: 73  tcgataaacctctgcatccagcg 95




>42502_sbi-MIR162:mirbase
          Length = 127

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 85  cgatcgataaacctctgcatccag 108
           ||||||||||||||||||||||||
Sbjct: 104 cgatcgataaacctctgcatccag 127




>41929_osa-MIR162a:mirbase
          Length = 171

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 85  cgatcgataaacctctgcatccag 108
           ||||||||||||||||||||||||
Sbjct: 140 cgatcgataaacctctgcatccag 163




>41736_bdi-MIR162:mirbase
          Length = 133

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 85  cgatcgataaacctctgcatcc 106
           ||||||||||||||||||||||
Sbjct: 108 cgatcgataaacctctgcatcc 129




>42708_zma-MIR162:mirbase
          Length = 130

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 88  tcgataaacctctgcatccag 108
           |||||||||||||||||||||
Sbjct: 110 tcgataaacctctgcatccag 130




>41530_sly-MIR162:mirbase
          Length = 99

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 88  tcgataaacctctgcatccag 108
           |||||||||||||||||||||
Sbjct: 79  tcgataaacctctgcatccag 99




>41930_osa-MIR162b:mirbase
          Length = 134

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 85  cgatcgataaacctctgcatccag 108
           |||||||||| |||||||||||||
Sbjct: 101 cgatcgataagcctctgcatccag 124