miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41347_ptc-MIR168a:mirbase
          Length = 160

 Score =  244 bits (123), Expect = 2e-65
 Identities = 151/162 (93%), Gaps = 2/162 (1%)
 Strand = Plus / Plus

                                                                       
Query: 16  ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60

                                                                       
Query: 76  tcgacatgactggttgttgtggaaaaagaaaaggaaggaaataggnnnnnnnnnncaaag 135
           ||||||||||||||||||||||||||||||||||||||||| |||          |||||
Sbjct: 61  tcgacatgactggttgttgtggaaaaagaaaaggaaggaaacagg--aaaaaaaacaaag 118

                                                     
Query: 136 aatagcgaattggatcccgccttgcatcaactgaatcggagg 177
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 aatagcgaattggatcccgccttgcatcaactgaatcggagg 160




>41348_ptc-MIR168b:mirbase
          Length = 136

 Score =  113 bits (57), Expect = 5e-26
 Identities = 60/61 (98%)
 Strand = Plus / Plus

                                                                      
Query: 16 ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 75
          ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60

           
Query: 76 t 76
          |
Sbjct: 61 t 61



 Score = 69.9 bits (35), Expect = 7e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 142 gaattggatcccgccttgcatcaactgaatcggag 176
           |||||||||||||||||||||||||||||||||||
Sbjct: 101 gaattggatcccgccttgcatcaactgaatcggag 135




>40448_gma-MIR168:mirbase
          Length = 125

 Score = 93.7 bits (47), Expect = 5e-20
 Identities = 47/47 (100%)
 Strand = Plus / Plus

                                                          
Query: 141 cgaattggatcccgccttgcatcaactgaatcggaggccgcggtgaa 187
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  cgaattggatcccgccttgcatcaactgaatcggaggccgcggtgaa 124



 Score = 60.0 bits (30), Expect = 7e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 14 gcggtctctgattcgcttggtgcaggtcgggaac 47
          ||||||||| ||||||||||||||||||||||||
Sbjct: 7  gcggtctctaattcgcttggtgcaggtcgggaac 40




>41101_tcc-MIR168:mirbase
          Length = 167

 Score = 83.8 bits (42), Expect = 4e-17
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                         
Query: 141 cgaattggatcccgccttgcatcaactgaatcggaggccgcggtga 186
           |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 117 cgaattggatcccgccttgcatcaactgaatcggagaccgcggtga 162



 Score = 81.8 bits (41), Expect = 2e-16
 Identities = 44/45 (97%)
 Strand = Plus / Plus

                                                       
Query: 8  ttaccggcggtctctgattcgcttggtgcaggtcgggaactgatt 52
          ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 3  ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 47




>41215_crt-MIR168:mirbase
          Length = 201

 Score = 81.8 bits (41), Expect = 2e-16
 Identities = 44/45 (97%)
 Strand = Plus / Plus

                                                       
Query: 8  ttaccggcggtctctgattcgcttggtgcaggtcgggaactgatt 52
          ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 3  ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 47



 Score = 77.8 bits (39), Expect = 3e-15
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                          
Query: 140 gcgaattggatcccgccttgcatcaactgaatcggaggccgcggtga 186
           ||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 132 gcgaattggatcccgccttgcatcaactgaatcggagaccgaggtga 178




>41210_ccl-MIR168:mirbase
          Length = 176

 Score = 81.8 bits (41), Expect = 2e-16
 Identities = 44/45 (97%)
 Strand = Plus / Plus

                                                       
Query: 8  ttaccggcggtctctgattcgcttggtgcaggtcgggaactgatt 52
          ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2  ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 46



 Score = 75.8 bits (38), Expect = 1e-14
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                         
Query: 140 gcgaattggatcccgccttgcatcaactgaatcggaggccgcggtg 185
           ||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 131 gcgaattggatcccgccttgcatcaactgaatcggagaccgaggtg 176




>40044_ath-MIR168b:mirbase
          Length = 124

 Score = 81.8 bits (41), Expect = 2e-16
 Identities = 44/45 (97%)
 Strand = Plus / Plus

                                                       
Query: 8  ttaccggcggtctctgattcgcttggtgcaggtcgggaactgatt 52
          |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1  ttaccggcggtctcggattcgcttggtgcaggtcgggaactgatt 45



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 150 tcccgccttgcatcaactgaatcggaggccgcggtga 186
           ||||| |||| |||||||||||||||| ||| |||||
Sbjct: 88  tcccgtcttgtatcaactgaatcggagtccgaggtga 124




>39833_aly-MIR168b:mirbase
          Length = 176

 Score = 81.8 bits (41), Expect = 2e-16
 Identities = 44/45 (97%)
 Strand = Plus / Plus

                                                       
Query: 8  ttaccggcggtctctgattcgcttggtgcaggtcgggaactgatt 52
          |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 25 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgatt 69



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 148 gatcccgccttgcatcaactgaatcggaggccgcggtgaa 187
           ||||||| |||| |||||||||||||||| ||| ||||||
Sbjct: 110 gatcccgtcttgtatcaactgaatcggagtccgaggtgaa 149




>40271_bna-MIR168:mirbase
          Length = 133

 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                   
Query: 12 cggcggtctctgattcgcttggtgcaggtcgggaactgatt 52
          |||||| |||||| |||||||||||||||||||||||||||
Sbjct: 4  cggcggcctctgactcgcttggtgcaggtcgggaactgatt 44




>40355_rco-MIR168:mirbase
          Length = 131

 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 142 gaattggatcccgccttgcatcaactgaatcg 173
           ||||||||||||||||||||||||||||||||
Sbjct: 97  gaattggatcccgccttgcatcaactgaatcg 128



 Score = 58.0 bits (29), Expect = 3e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 24 attcgcttggtgcaggtcgggaactgatt 52
          |||||||||||||||||||||||||||||
Sbjct: 4  attcgcttggtgcaggtcgggaactgatt 32




>40043_ath-MIR168a:mirbase
          Length = 138

 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 144 attggatcccgccttgcatcaactgaatcgga 175
           ||||||||||||||||||||||||||||||||
Sbjct: 96  attggatcccgccttgcatcaactgaatcgga 127



 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 23 gattcgcttggtgcaggtcgggaactgattcggc 56
          |||||||||||||||||||||||||  |||||||
Sbjct: 15 gattcgcttggtgcaggtcgggaaccaattcggc 48




>39832_aly-MIR168a:mirbase
          Length = 155

 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 144 attggatcccgccttgcatcaactgaatcgga 175
           ||||||||||||||||||||||||||||||||
Sbjct: 102 attggatcccgccttgcatcaactgaatcgga 133



 Score = 54.0 bits (27), Expect = 4e-08
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                         
Query: 10 accggcggtctctgattcgcttggtgcaggtcgggaactgattcggc 56
          |||| ||| ||| |||||||||||||||||||||||||  |||||||
Sbjct: 8  accgtcgggctcggattcgcttggtgcaggtcgggaaccaattcggc 54




>41596_vvi-MIR168:mirbase
          Length = 132

 Score = 58.0 bits (29), Expect = 3e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 148 gatcccgccttgcatcaactgaatcggag 176
           |||||||||||||||||||||||||||||
Sbjct: 99  gatcccgccttgcatcaactgaatcggag 127



 Score = 56.0 bits (28), Expect = 1e-08
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 16 ggtctctgattcgcttggtgcaggtcgggaac 47
          ||||||| ||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaac 32




>42742_zma-MIR168b:mirbase
          Length = 104

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 147 ggatcccgccttgcatcaactgaatcggag 176
           ||||||||||||||||||| ||||||||||
Sbjct: 63  ggatcccgccttgcatcaagtgaatcggag 92




>42741_zma-MIR168a:mirbase
          Length = 104

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 147 ggatcccgccttgcatcaactgaatcggag 176
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92




>42470_ssp-MIR168a:mirbase
          Length = 99

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 147 ggatcccgccttgcatcaactgaatcggag 176
           ||||||||||||||| ||| ||||||||||
Sbjct: 60  ggatcccgccttgcaccaagtgaatcggag 89




>42460_sof-MIR168b:mirbase
          Length = 103

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 147 ggatcccgccttgcatcaactgaatcggag 176
           ||||||||||||||| ||| ||||||||||
Sbjct: 62  ggatcccgccttgcaccaagtgaatcggag 91




>42459_sof-MIR168a:mirbase
          Length = 104

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 147 ggatcccgccttgcatcaactgaatcggag 176
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92




>41962_osa-MIR168a:mirbase
          Length = 87

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 147 ggatcccgccttgcatcaactgaatcggag 176
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>41961_osa-MIR168a:mirbase
          Length = 87

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 147 ggatcccgccttgcatcaactgaatcggag 176
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>41888_hvu-MIR168:mirbase
          Length = 106

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 147 ggatcccgccttgcatcaactgaatcggag 176
           ||||||||||||||| ||| ||||||||||
Sbjct: 66  ggatcccgccttgcaccaagtgaatcggag 95




>41887_hvu-MIR168:mirbase
          Length = 106

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 147 ggatcccgccttgcatcaactgaatcggag 176
           ||||||||||||||| ||| ||||||||||
Sbjct: 66  ggatcccgccttgcaccaagtgaatcggag 95




>41753_bdi-MIR168:mirbase
          Length = 136

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 147 ggatcccgccttgcatcaactgaatcggag 176
           ||||||||||||||| ||| ||||||||||
Sbjct: 75  ggatcccgccttgcaccaagtgaatcggag 104