miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41348_ptc-MIR168b:mirbase
          Length = 136

 Score =  254 bits (128), Expect = 2e-68
 Identities = 134/136 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggtctctaattcgcttggtgcaggtcgggaactgattctgcgatttcattgccagatggc 64
           |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 1   ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60

                                                                       
Query: 65  taaacacgattggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taaacacgattggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgca 120

                           
Query: 125 tcaactgaatcggaga 140
           ||||||||||||||||
Sbjct: 121 tcaactgaatcggaga 136




>41347_ptc-MIR168a:mirbase
          Length = 160

 Score = 97.6 bits (49), Expect = 2e-21
 Identities = 58/61 (95%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggtctctaattcgcttggtgcaggtcgggaactgattctgcgatttcattgccagatggc 64
          ||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 1  ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60

           
Query: 65 t 65
          |
Sbjct: 61 t 61



 Score = 69.9 bits (35), Expect = 5e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 105 gaattggatcccgccttgcatcaactgaatcggag 139
           |||||||||||||||||||||||||||||||||||
Sbjct: 125 gaattggatcccgccttgcatcaactgaatcggag 159




>41215_crt-MIR168:mirbase
          Length = 201

 Score = 81.8 bits (41), Expect = 1e-16
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                   
Query: 1  cggcggtctctaattcgcttggtgcaggtcgggaactgatt 41
          |||||||||||||||||||||||||||||||||||||||||
Sbjct: 7  cggcggtctctaattcgcttggtgcaggtcgggaactgatt 47



 Score = 77.8 bits (39), Expect = 2e-15
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                  
Query: 105 gaattggatcccgccttgcatcaactgaatcggagaccg 143
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gaattggatcccgccttgcatcaactgaatcggagaccg 172




>41210_ccl-MIR168:mirbase
          Length = 176

 Score = 81.8 bits (41), Expect = 1e-16
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                   
Query: 1  cggcggtctctaattcgcttggtgcaggtcgggaactgatt 41
          |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6  cggcggtctctaattcgcttggtgcaggtcgggaactgatt 46



 Score = 77.8 bits (39), Expect = 2e-15
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                  
Query: 105 gaattggatcccgccttgcatcaactgaatcggagaccg 143
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gaattggatcccgccttgcatcaactgaatcggagaccg 171




>41101_tcc-MIR168:mirbase
          Length = 167

 Score = 81.8 bits (41), Expect = 1e-16
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                   
Query: 1  cggcggtctctaattcgcttggtgcaggtcgggaactgatt 41
          |||||||||||||||||||||||||||||||||||||||||
Sbjct: 7  cggcggtctctaattcgcttggtgcaggtcgggaactgatt 47



 Score = 81.8 bits (41), Expect = 1e-16
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 105 gaattggatcccgccttgcatcaactgaatcggagaccgcg 145
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gaattggatcccgccttgcatcaactgaatcggagaccgcg 158




>40448_gma-MIR168:mirbase
          Length = 125

 Score = 73.8 bits (37), Expect = 3e-14
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                    
Query: 105 gaattggatcccgccttgcatcaactgaatcggagaccgcg 145
           ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 79  gaattggatcccgccttgcatcaactgaatcggaggccgcg 119



 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 3  gcggtctctaattcgcttggtgcaggtcgggaac 36
          ||||||||||||||||||||||||||||||||||
Sbjct: 7  gcggtctctaattcgcttggtgcaggtcgggaac 40




>40355_rco-MIR168:mirbase
          Length = 131

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 99  gaaagagaattggatcccgccttgcatcaactgaatcg 136
           ||||| ||||||||||||||||||||||||||||||||
Sbjct: 91  gaaagtgaattggatcccgccttgcatcaactgaatcg 128



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 10 ctaattcgcttggtgcaggtcgggaactgatt 41
          ||||||||||||||||||||||||||||||||
Sbjct: 1  ctaattcgcttggtgcaggtcgggaactgatt 32




>40044_ath-MIR168b:mirbase
          Length = 124

 Score = 65.9 bits (33), Expect = 8e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                   
Query: 1  cggcggtctctaattcgcttggtgcaggtcgggaactgatt 41
          ||||||||||  |||||||||||||||||||||||||||||
Sbjct: 5  cggcggtctcggattcgcttggtgcaggtcgggaactgatt 45




>39833_aly-MIR168b:mirbase
          Length = 176

 Score = 65.9 bits (33), Expect = 8e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                   
Query: 1  cggcggtctctaattcgcttggtgcaggtcgggaactgatt 41
          ||||||||||  |||||||||||||||||||||||||||||
Sbjct: 29 cggcggtctcggattcgcttggtgcaggtcgggaactgatt 69



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 111 gatcccgccttgcatcaactgaatcggag 139
           ||||||| |||| ||||||||||||||||
Sbjct: 110 gatcccgtcttgtatcaactgaatcggag 138




>41596_vvi-MIR168:mirbase
          Length = 132

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 5  ggtctctaattcgcttggtgcaggtcgggaac 36
          ||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaac 32



 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 111 gatcccgccttgcatcaactgaatcggagac 141
           |||||||||||||||||||||||||||||||
Sbjct: 99  gatcccgccttgcatcaactgaatcggagac 129




>40043_ath-MIR168a:mirbase
          Length = 138

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 107 attggatcccgccttgcatcaactgaatcgga 138
           ||||||||||||||||||||||||||||||||
Sbjct: 96  attggatcccgccttgcatcaactgaatcgga 127



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 13 attcgcttggtgcaggtcgggaac 36
          ||||||||||||||||||||||||
Sbjct: 16 attcgcttggtgcaggtcgggaac 39




>39832_aly-MIR168a:mirbase
          Length = 155

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 107 attggatcccgccttgcatcaactgaatcgga 138
           ||||||||||||||||||||||||||||||||
Sbjct: 102 attggatcccgccttgcatcaactgaatcgga 133



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 13 attcgcttggtgcaggtcgggaac 36
          ||||||||||||||||||||||||
Sbjct: 22 attcgcttggtgcaggtcgggaac 45




>40271_bna-MIR168:mirbase
          Length = 133

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                   
Query: 1  cggcggtctctaattcgcttggtgcaggtcgggaactgatt 41
          |||||| |||| | |||||||||||||||||||||||||||
Sbjct: 4  cggcggcctctgactcgcttggtgcaggtcgggaactgatt 44




>42742_zma-MIR168b:mirbase
          Length = 104

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 110 ggatcccgccttgcatcaactgaatcggag 139
           ||||||||||||||||||| ||||||||||
Sbjct: 63  ggatcccgccttgcatcaagtgaatcggag 92




>42741_zma-MIR168a:mirbase
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 110 ggatcccgccttgcatcaactgaatcggag 139
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92




>42470_ssp-MIR168a:mirbase
          Length = 99

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 110 ggatcccgccttgcatcaactgaatcggag 139
           ||||||||||||||| ||| ||||||||||
Sbjct: 60  ggatcccgccttgcaccaagtgaatcggag 89




>42460_sof-MIR168b:mirbase
          Length = 103

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 110 ggatcccgccttgcatcaactgaatcggag 139
           ||||||||||||||| ||| ||||||||||
Sbjct: 62  ggatcccgccttgcaccaagtgaatcggag 91




>42459_sof-MIR168a:mirbase
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 110 ggatcccgccttgcatcaactgaatcggag 139
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92




>41962_osa-MIR168a:mirbase
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 110 ggatcccgccttgcatcaactgaatcggag 139
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>41961_osa-MIR168a:mirbase
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 110 ggatcccgccttgcatcaactgaatcggag 139
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>41888_hvu-MIR168:mirbase
          Length = 106

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 110 ggatcccgccttgcatcaactgaatcggag 139
           ||||||||||||||| ||| ||||||||||
Sbjct: 66  ggatcccgccttgcaccaagtgaatcggag 95




>41887_hvu-MIR168:mirbase
          Length = 106

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 110 ggatcccgccttgcatcaactgaatcggag 139
           ||||||||||||||| ||| ||||||||||
Sbjct: 66  ggatcccgccttgcaccaagtgaatcggag 95




>41753_bdi-MIR168:mirbase
          Length = 136

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 110 ggatcccgccttgcatcaactgaatcggag 139
           ||||||||||||||| ||| ||||||||||
Sbjct: 75  ggatcccgccttgcaccaagtgaatcggag 104