miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41436_ptc-MIR396b:mirbase
          Length = 132

 Score =  230 bits (116), Expect = 3e-61
 Identities = 128/132 (96%)
 Strand = Plus / Plus

                                                                       
Query: 22  ctttgtattcttccacagctttcttgaactgcacctattagatttatgttgatgttgttg 81
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1   ctttgtattcttccacagctttcttgaactgcacctattagattaatgttgatgttgttg 60

                                                                       
Query: 82  tgcgatatgccatgaccatatgacattgtattcatttttgctgcggatcaataaaactgg 141
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| 
Sbjct: 61  tgcgatatgccatgaccatatgacattgtattcatttttgctgcggttcaataaagctgt 120

                       
Query: 142 gggaagatacaa 153
           ||||||||||||
Sbjct: 121 gggaagatacaa 132




>39877_aly-MIR396a:mirbase
          Length = 172

 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                   
Query: 14 gtgaccctctttgtattcttccacagctttcttgaactgca 54
          |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 6  gtgaccctctctgtattcttccacagctttcttgaactgca 46




>41139_tcc-MIR396b:mirbase
          Length = 151

 Score = 71.9 bits (36), Expect = 2e-13
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                              
Query: 18 ccctctttgtattcttccacagctttcttgaactgc 53
          ||||||||||||||||||||||||||||||||||||
Sbjct: 7  ccctctttgtattcttccacagctttcttgaactgc 42




>40646_lja-MIR396:mirbase
          Length = 108

 Score = 71.9 bits (36), Expect = 2e-13
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                              
Query: 19 cctctttgtattcttccacagctttcttgaactgca 54
          ||||||||||||||||||||||||||||||||||||
Sbjct: 3  cctctttgtattcttccacagctttcttgaactgca 38




>41435_ptc-MIR396a:mirbase
          Length = 123

 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 26 gtattcttccacagctttcttgaactgcacctatt 60
          |||||||||||||||||||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaactgcacctatt 39




>40473_gma-MIR396a:mirbase
          Length = 140

 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 20 ctctttgtattcttccacagctttcttgaactgca 54
          |||||||||||||||||||||||||||||||||||
Sbjct: 9  ctctttgtattcttccacagctttcttgaactgca 43




>41663_vvi-MIR396d:mirbase
          Length = 120

 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 22 ctttgtattcttccacagctttcttgaactgca 54
          |||||||||||||||||||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgca 33




>41242_csi-MIR396b:mirbase
          Length = 134

 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 19 cctctttgtattcttccacagctttcttgaactgca 54
          |||||||||||| |||||||||||||||||||||||
Sbjct: 7  cctctttgtatttttccacagctttcttgaactgca 42



 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 118 tttgctgcggatcaataaaactgggggaagatacaaacagg 158
           |||| ||||| |||||||| ||| |||||||||||||||||
Sbjct: 78  tttgttgcggttcaataaagctgtgggaagatacaaacagg 118




>40085_ath-MIR396a:mirbase
          Length = 151

 Score = 60.0 bits (30), Expect = 6e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 25 tgtattcttccacagctttcttgaactgca 54
          ||||||||||||||||||||||||||||||
Sbjct: 4  tgtattcttccacagctttcttgaactgca 33




>41058_ghr-MIR396b:mirbase
          Length = 135

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 26 gtattcttccacagctttcttgaactgca 54
          |||||||||||||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaactgca 33



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 123 tgcggatcaataaaactgggggaagatacaaac 155
           ||||| |||||||| ||| ||||||||||||||
Sbjct: 103 tgcggttcaataaagctgtgggaagatacaaac 135




>41057_ghr-MIR396a:mirbase
          Length = 136

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 26 gtattcttccacagctttcttgaactgca 54
          |||||||||||||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaactgca 33



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 123 tgcggatcaataaaactgggggaagatacaaaca 156
           ||||| |||||||| ||| |||||||||||||||
Sbjct: 103 tgcggttcaataaagctgtgggaagatacaaaca 136




>40727_mtr-MIR396b:mirbase
          Length = 95

 Score = 56.0 bits (28), Expect = 9e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 27 tattcttccacagctttcttgaactgca 54
          ||||||||||||||||||||||||||||
Sbjct: 1  tattcttccacagctttcttgaactgca 28




>42814_zma-MIR396h:mirbase
          Length = 124

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 21  tctttgtattcttccacagctttcttgaactgca 54
           |||||||  |||||||||||||||||||||||||
Sbjct: 109 tctttgtgatcttccacagctttcttgaactgca 76




>42808_zma-MIR396b:mirbase
          Length = 136

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 21 tctttgtattcttccacagctttcttgaactgca 54
          |||||||  |||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgca 43




>42583_sbi-MIR396b:mirbase
          Length = 128

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 21 tctttgtattcttccacagctttcttgaactgca 54
          |||||||  |||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgca 43



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 34  ccacagctttcttgaactgcacct 57
           |||||||||| |||||||||||||
Sbjct: 107 ccacagctttattgaactgcacct 84




>42461_sof-MIR396:mirbase
          Length = 134

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 21 tctttgtattcttccacagctttcttgaactgca 54
          |||||||  |||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgca 43



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 34  ccacagctttcttgaactgcacct 57
           |||||||||| |||||||||||||
Sbjct: 113 ccacagctttattgaactgcacct 90




>42026_osa-MIR396a:mirbase
          Length = 154

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 30 tcttccacagctttcttgaactgcac 55
          ||||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcac 34




>41241_csi-MIR396a:mirbase
          Length = 153

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 19 cctctttgtattcttccacagctttcttgaactg 52
          |||||||||  |||||||||||||||||||||||
Sbjct: 8  cctctttgtgatcttccacagctttcttgaactg 41




>42813_zma-MIR396g:mirbase
          Length = 114

 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 30  tcttccacagctttcttgaactgca 54
           |||||||||||||||||||||||||
Sbjct: 113 tcttccacagctttcttgaactgca 89




>42807_zma-MIR396a:mirbase
          Length = 137

 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 30 tcttccacagctttcttgaactgca 54
          |||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgca 43




>42582_sbi-MIR396a:mirbase
          Length = 125

 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 30 tcttccacagctttcttgaactgca 54
          |||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgca 43




>42027_osa-MIR396b:mirbase
          Length = 116

 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 30 tcttccacagctttcttgaactgca 54
          |||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgca 33




>41794_bdi-MIR396d:mirbase
          Length = 152

 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 30 tcttccacagctttcttgaactgca 54
          |||||||||||||||||||||||||
Sbjct: 31 tcttccacagctttcttgaactgca 55




>41793_bdi-MIR396c:mirbase
          Length = 153

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 30 tcttccacagctttcttgaactgc 53
          ||||||||||||||||||||||||
Sbjct: 31 tcttccacagctttcttgaactgc 54




>42472_ssp-MIR396:mirbase
          Length = 95

 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 32 ttccacagctttcttgaactgca 54
          |||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgca 23



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 34 ccacagctttcttgaactgcacct 57
          |||||||||| |||||||||||||
Sbjct: 93 ccacagctttattgaactgcacct 70




>41662_vvi-MIR396c:mirbase
          Length = 108

 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 30 tcttccacagctttcttgaactg 52
          |||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactg 31




>41188_aqc-MIR396a:mirbase
          Length = 122

 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 32 ttccacagctttcttgaactgca 54
          |||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgca 23




>40477_gma-MIR396e:mirbase
          Length = 114

 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 30 tcttccacagctttcttgaactg 52
          |||||||||||||||||||||||
Sbjct: 5  tcttccacagctttcttgaactg 27




>39379_pab-MIR396a:mirbase
          Length = 100

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tcttccacagctttcttgaact 51
          ||||||||||||||||||||||
Sbjct: 14 tcttccacagctttcttgaact 35




>41138_tcc-MIR396a:mirbase
          Length = 146

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 32 ttccacagctttcttgaactg 52
          |||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactg 41




>39878_aly-MIR396b:mirbase
          Length = 188

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 27 tattcttccacagctttcttgaact 51
          |||| ||||||||||||||||||||
Sbjct: 27 tatttttccacagctttcttgaact 51




>42812_zma-MIR396f:mirbase
          Length = 117

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 2  ttccacagctttcttgaact 21




>42811_zma-MIR396e:mirbase
          Length = 166

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 2  ttccacagctttcttgaact 21




>42584_sbi-MIR396c:mirbase
          Length = 162

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>42028_osa-MIR396c:mirbase
          Length = 141

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>41795_bdi-MIR396e:mirbase
          Length = 201

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 32 ttccacagctttcttgaact 51




>41661_vvi-MIR396b:mirbase
          Length = 108

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33




>41660_vvi-MIR396a:mirbase
          Length = 116

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33




>41439_ptc-MIR396e:mirbase
          Length = 145

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>41438_ptc-MIR396d:mirbase
          Length = 154

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>41437_ptc-MIR396c:mirbase
          Length = 102

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>41243_csi-MIR396c:mirbase
          Length = 178

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 13 ttccacagctttcttgaact 32




>41212_ccl-MIR396:mirbase
          Length = 277

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 32  ttccacagctttcttgaact 51
           ||||||||||||||||||||
Sbjct: 143 ttccacagctttcttgaact 162




>41189_aqc-MIR396b:mirbase
          Length = 89

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>41142_tcc-MIR396e:mirbase
          Length = 146

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>41140_tcc-MIR396c:mirbase
          Length = 152

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>40726_mtr-MIR396a:mirbase
          Length = 93

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 6  ttccacagctttcttgaact 25




>40476_gma-MIR396d:mirbase
          Length = 108

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>40475_gma-MIR396c:mirbase
          Length = 117

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>40474_gma-MIR396b:mirbase
          Length = 126

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>40379_rco-MIR396:mirbase
          Length = 124

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 6  ttccacagctttcttgaact 25




>40296_bna-MIR396a:mirbase
          Length = 117

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>40086_ath-MIR396b:mirbase
          Length = 135

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>39426_pta-MIR396:mirbase
          Length = 119

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 ttccacagctttcttgaact 51
          ||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36