miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41510_ptc-MIR530b:mirbase
          Length = 172

 Score =  276 bits (139), Expect = 6e-75
 Identities = 172/186 (92%), Gaps = 14/186 (7%)
 Strand = Plus / Plus

                                                                       
Query: 9   gccaatatgttgcctttatctgcatttgcacctgcatcttttgcgtttgttttgtttttg 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gccaatatgttgcctttatctgcatttgcacctgcatcttttgcgtttgttttgtttttg 60

                                                                       
Query: 69  actccacaaacaaaatcaagttctgtcgatacagtatgtgggacaattagatatagagtg 128
           ||||||||||||||||||||||||||||||||||||||||||||||              
Sbjct: 61  actccacaaacaaaatcaagttctgtcgatacagtatgtgggacaa-------------- 106

                                                                       
Query: 129 ttagatatggaaactaataagcttagttgaggtgcaggtgcaagtgcaggtgaatgccat 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ttagatatggaaactaataagcttagttgaggtgcaggtgcaagtgcaggtgaatgccat 166

                 
Query: 189 tttggt 194
           ||||||
Sbjct: 167 tttggt 172




>41509_ptc-MIR530a:mirbase
          Length = 144

 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 9  gccaatatgttgcctttatctgcatttgcacctgca 44
          ||||| ||||||||||||||||||||||||||||||
Sbjct: 1  gccaacatgttgcctttatctgcatttgcacctgca 36



 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 155 ttgaggtgcaggtgcaagtgcaggtgaatgccattttggt 194
           |||||||||||||||| ||||||||||||||||| |||||
Sbjct: 105 ttgaggtgcaggtgcaggtgcaggtgaatgccatgttggt 144




>41263_csi-MIR530b:mirbase
          Length = 154

 Score = 56.0 bits (28), Expect = 1e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 21 cctttatctgcatttgcacctgcatctt 48
          ||||||||||||||||||||||||||||
Sbjct: 3  cctttatctgcatttgcacctgcatctt 30



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 158 aggtgcaggtgcaagtgcaggtgaatgcc 186
           |||||||| ||||||||||| ||||||||
Sbjct: 126 aggtgcagttgcaagtgcagatgaatgcc 154




>41158_tcc-MIR530b:mirbase
          Length = 178

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 15 atgttgcctttatctgcatttgcacctgca 44
          |||| |||||||||||||||||||||||||
Sbjct: 7  atgtagcctttatctgcatttgcacctgca 36



 Score = 50.1 bits (25), Expect = 7e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 157 gaggtgcaggtgcaagtgcaggtgaatgccattttgg 193
           |||||||||| |||  |||||||||||||||||||||
Sbjct: 137 gaggtgcaggggcagctgcaggtgaatgccattttgg 173




>41157_tcc-MIR530a:mirbase
          Length = 163

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 23 tttatctgcatttgcacctgca 44
          ||||||||||||||||||||||
Sbjct: 15 tttatctgcatttgcacctgca 36




>41205_aqc-MIR530:mirbase
          Length = 142

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tctgcatttgcacctgcatct 47
          |||||||||||||||||||||
Sbjct: 10 tctgcatttgcacctgcatct 30