miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37717_tca-mir-29:mirbase
          Length = 130

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 58 ttctagcaccatatgaaatcagtt 81
          ||||||||||||||||||||||||
Sbjct: 74 ttctagcaccatatgaaatcagtt 97

>37718_tca-mir-29:mirbase
          Length = 130

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 58 ttctagcaccatatgaaatcagtt 81
          ||||||||||||||||||||||||
Sbjct: 74 ttctagcaccatatgaaatcagtt 97

>34867_sko-mir-29a:mirbase
          Length = 96

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 59 tctagcaccatatgaaatcagtt 81
          |||||||||||||||||||||||
Sbjct: 59 tctagcaccatatgaaatcagtt 81

>25730_xtr-mir-29d:mirbase
          Length = 75

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 tctagcaccatatgaaatcagt 80
          ||||||||||||||||||||||
Sbjct: 47 tctagcaccatatgaaatcagt 68

>25451_pma-mir-29a:mirbase
          Length = 83

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 59 tctagcaccatatgaaatcagttat 83
          ||||||||||| |||||||||||||
Sbjct: 48 tctagcaccatttgaaatcagttat 72