miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>24657_bfl-mir-33-1:mirbase
Length = 82
Score = 79.8 bits (40), Expect = 3e-16
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattgcatgtgcaacacagaagtgcaatgtaactgcagtgcagcc 74
|||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||
Sbjct: 6 ggtgcattgtagttgcattgcatgtgcacaaaggaagtgcaatgtaacagcagtgcagct 65
Query: 75 caga 78
||||
Sbjct: 66 caga 69
>25740_xtr-mir-33a:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattgcatgtg 40
||||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgtg 30
>25924_gga-mir-33:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 gtgcattgtagttgcattgcatgtgc 41
||||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgtgc 31
>26982_eca-mir-33a:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattgcatgt 39
|||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgt 29
>27689_mml-mir-33a:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattgcatgt 39
|||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgt 29
>28196_mne-mir-33:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattgcatgt 39
|||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgt 29
>28284_ggo-mir-33:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattgcatgt 39
|||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgt 29
>28399_hsa-mir-33a:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattgcatgt 39
|||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgt 29
>30071_ppa-mir-33:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattgcatgt 39
|||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgt 29
>30185_ptr-mir-33a:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattgcatgt 39
|||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgt 29
>30789_ppy-mir-33:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattgcatgt 39
|||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgt 29
>31458_oan-mir-33a:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 gtgcattgtagttgcattgcatgtg 40
|||||||||||||||||||||||||
Sbjct: 22 gtgcattgtagttgcattgcatgtg 46
>31459_oan-mir-33a:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 gtgcattgtagttgcattgcatgtg 40
|||||||||||||||||||||||||
Sbjct: 22 gtgcattgtagttgcattgcatgtg 46
>31814_mmu-mir-33:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattgcatgt 39
|||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgt 29
>32696_rno-mir-33:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattgcatgt 39
|||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgt 29
>33173_bta-mir-33a:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattgcatgt 39
|||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgt 29
>37721_tca-mir-33:mirbase
Length = 102
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattgcatgt 39
|||||||||||||||||||||||||
Sbjct: 24 ggtgcattgtagttgcattgcatgt 48
>37722_tca-mir-33:mirbase
Length = 102
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattgcatgt 39
|||||||||||||||||||||||||
Sbjct: 24 ggtgcattgtagttgcattgcatgt 48
>38738_cte-mir-33:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattgcatg 38
||||||||||||||||||||||||
Sbjct: 20 ggtgcattgtagttgcattgcatg 43
>26431_tgu-mir-33:mirbase
Length = 70
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 gtgcattgtagttgcattgcatgt 39
||||||||||||||||||||||||
Sbjct: 11 gtgcattgtagttgcattgcatgt 34
>26661_cfa-mir-33:mirbase
Length = 61
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 gtgcattgtagttgcattgcatgt 39
||||||||||||||||||||||||
Sbjct: 1 gtgcattgtagttgcattgcatgt 24
>38857_lgi-mir-33:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattgcat 37
|||||||||||||||||||||||
Sbjct: 20 ggtgcattgtagttgcattgcat 42
>35183_aae-mir-33:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 gggtgcattgtagttgcattgca 36
|||||||||||||||||||||||
Sbjct: 7 gggtgcattgtagttgcattgca 29
>35357_ame-mir-33:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gtgcattgtagttgcattgcatg 38
|||||||||||||||||||||||
Sbjct: 31 gtgcattgtagttgcattgcatg 53
>36014_cqu-mir-33:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 gggtgcattgtagttgcattgca 36
|||||||||||||||||||||||
Sbjct: 1 gggtgcattgtagttgcattgca 23
>37644_nvi-mir-33:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gtgcattgtagttgcattgcatg 38
|||||||||||||||||||||||
Sbjct: 31 gtgcattgtagttgcattgcatg 53
>27359_mdo-mir-33:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattgca 36
||||||||||||||||||||||
Sbjct: 1 ggtgcattgtagttgcattgca 22
>24815_cin-mir-33:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 16 gtgcattgtagttgcattgca 36
|||||||||||||||||||||
Sbjct: 16 gtgcattgtagttgcattgca 36
>25741_xtr-mir-33b:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattgcatgt 39
|||||||||| ||||||||||||||
Sbjct: 5 ggtgcattgttgttgcattgcatgt 29
>31460_oan-mir-33b:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 16 gtgcattgtagttgcattgca 36
|||||||||||||||||||||
Sbjct: 14 gtgcattgtagttgcattgca 34
>31461_oan-mir-33b:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 16 gtgcattgtagttgcattgca 36
|||||||||||||||||||||
Sbjct: 14 gtgcattgtagttgcattgca 34
>35004_dpu-mir-33:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 16 gtgcattgtagttgcattgca 36
|||||||||||||||||||||
Sbjct: 21 gtgcattgtagttgcattgca 41
>35530_bmo-mir-33:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 16 gtgcattgtagttgcattgca 36
|||||||||||||||||||||
Sbjct: 11 gtgcattgtagttgcattgca 31
>25464_pma-mir-33a:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattg 34
||||||||||||||||||||
Sbjct: 15 ggtgcattgtagttgcattg 34
>34814_spu-mir-33:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 15 ggtgcattgtagttgcattgcat 37
|||||||||| ||||||||||||
Sbjct: 20 ggtgcattgtcgttgcattgcat 42
