miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27389_mdo-mir-141:mirbase
Length = 64
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 ttctaacactgtctggtaaagatgc 69
|||||||||||||||||||||||||
Sbjct: 38 ttctaacactgtctggtaaagatgc 62
>24837_cin-mir-141:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tctaacactgtctggtaaagatgc 69
||||||||||||||||||||||||
Sbjct: 38 tctaacactgtctggtaaagatgc 61
>30097_ppa-mir-141:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 ctaacactgtctggtaaagatgc 69
|||||||||||||||||||||||
Sbjct: 58 ctaacactgtctggtaaagatgc 80
>26715_cfa-mir-141:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ctaacactgtctggtaaagatg 68
||||||||||||||||||||||
Sbjct: 56 ctaacactgtctggtaaagatg 77
>27040_eca-mir-141:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ctaacactgtctggtaaagatg 68
||||||||||||||||||||||
Sbjct: 47 ctaacactgtctggtaaagatg 68
>27745_mml-mir-141:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ctaacactgtctggtaaagatg 68
||||||||||||||||||||||
Sbjct: 58 ctaacactgtctggtaaagatg 79
>28308_ggo-mir-141:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ctaacactgtctggtaaagatg 68
||||||||||||||||||||||
Sbjct: 58 ctaacactgtctggtaaagatg 79
>28460_hsa-mir-141:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ctaacactgtctggtaaagatg 68
||||||||||||||||||||||
Sbjct: 58 ctaacactgtctggtaaagatg 79
>30232_ptr-mir-141-1:mirbase
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ctaacactgtctggtaaagatg 68
||||||||||||||||||||||
Sbjct: 57 ctaacactgtctggtaaagatg 78
>30233_ptr-mir-141-2:mirbase
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ctaacactgtctggtaaagatg 68
||||||||||||||||||||||
Sbjct: 57 ctaacactgtctggtaaagatg 78
>30844_ppy-mir-141:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ctaacactgtctggtaaagatg 68
||||||||||||||||||||||
Sbjct: 58 ctaacactgtctggtaaagatg 79
>31873_mmu-mir-141:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ctaacactgtctggtaaagatg 68
||||||||||||||||||||||
Sbjct: 47 ctaacactgtctggtaaagatg 68
>32746_rno-mir-141:mirbase
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ctaacactgtctggtaaagatg 68
||||||||||||||||||||||
Sbjct: 57 ctaacactgtctggtaaagatg 78
>33227_bta-mir-141:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ctaacactgtctggtaaagatg 68
||||||||||||||||||||||
Sbjct: 57 ctaacactgtctggtaaagatg 78
>25991_gga-mir-200a:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 attctaacactgtctggtaaagatg 68
|||||||||||||||||||| ||||
Sbjct: 48 attctaacactgtctggtaacgatg 72
>34310_dre-mir-141:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 45 ttctaacactgtctggtaaagatgc 69
||||||||||||||||||| |||||
Sbjct: 48 ttctaacactgtctggtaacgatgc 72
>25820_xtr-mir-200a:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 ttctaacactgtctggtaaagatg 68
||||||||||||||||||| ||||
Sbjct: 50 ttctaacactgtctggtaacgatg 73
>34355_dre-mir-200a:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 ttctaacactgtctggtaaagatg 68
||||||||||||||||||| ||||
Sbjct: 49 ttctaacactgtctggtaacgatg 72
>34628_fru-mir-200a:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 ttctaacactgtctggtaaagatg 68
||||||||||||||||||| ||||
Sbjct: 47 ttctaacactgtctggtaacgatg 70
>34775_tni-mir-200a:mirbase
Length = 62
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 ttctaacactgtctggtaaagatg 68
||||||||||||||||||| ||||
Sbjct: 37 ttctaacactgtctggtaacgatg 60
>24694_bfl-mir-200c:mirbase
Length = 95
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 46 tctaacactgtctggtaaagatg 68
|||||||||||||||||| ||||
Sbjct: 56 tctaacactgtctggtaatgatg 78
>26498_tgu-mir-200a:mirbase
Length = 93
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 46 tctaacactgtctggtaaagatg 68
|||||||||||||||||| ||||
Sbjct: 59 tctaacactgtctggtaacgatg 81
>26759_cfa-mir-200a:mirbase
Length = 90
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 46 tctaacactgtctggtaaagatg 68
|||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatg 74
>27087_eca-mir-200a:mirbase
Length = 90
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 46 tctaacactgtctggtaaagatg 68
|||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatg 74
>27418_mdo-mir-200a:mirbase
Length = 86
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 46 tctaacactgtctggtaaagatg 68
|||||||||||||||||| ||||
Sbjct: 49 tctaacactgtctggtaacgatg 71
>27798_mml-mir-200a:mirbase
Length = 90
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 46 tctaacactgtctggtaaagatg 68
|||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatg 74
>28518_hsa-mir-200a:mirbase
Length = 90
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 46 tctaacactgtctggtaaagatg 68
|||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatg 74
>30279_ptr-mir-200a:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 46 tctaacactgtctggtaaagatg 68
|||||||||||||||||| ||||
Sbjct: 51 tctaacactgtctggtaacgatg 73
>30897_ppy-mir-200a:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 46 tctaacactgtctggtaaagatg 68
|||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatg 74
>31528_oan-mir-200a:mirbase
Length = 114
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 46 tctaacactgtctggtaaagatg 68
|||||||||||||||||| ||||
Sbjct: 64 tctaacactgtctggtaacgatg 86
>31923_mmu-mir-200a:mirbase
Length = 90
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 46 tctaacactgtctggtaaagatg 68
|||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatg 74
>32788_rno-mir-200a:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 46 tctaacactgtctggtaaagatg 68
|||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatg 74
>33035_rno-mir-3548:mirbase
Length = 120
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 46 tctaacactgtctggtaaagatg 68
|||||||||||||||||| ||||
Sbjct: 51 tctaacactgtctggtaacgatg 29
>33278_bta-mir-200a:mirbase
Length = 86
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 46 tctaacactgtctggtaaagatg 68
|||||||||||||||||| ||||
Sbjct: 50 tctaacactgtctggtaacgatg 72
