miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>28259_ggo-mir-15b:mirbase
          Length = 98

 Score =  133 bits (67), Expect = 2e-32
 Identities = 85/91 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgaggccttaaagtactctagcagcacatcatggtttgcatgctgtagtgaagatgcgaa 60
          ||||||||||||||||| ||||||||||||||||||| ||||||  ||| ||||||||||
Sbjct: 2  tgaggccttaaagtactgtagcagcacatcatggtttacatgctacagtcaagatgcgaa 61

                                         
Query: 61 tcattatttgctgctttagaaatttaaggaa 91
          ||||||||||||||| |||||||||||||||
Sbjct: 62 tcattatttgctgctctagaaatttaaggaa 92




>28361_hsa-mir-15b:mirbase
          Length = 98

 Score =  133 bits (67), Expect = 2e-32
 Identities = 85/91 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgaggccttaaagtactctagcagcacatcatggtttgcatgctgtagtgaagatgcgaa 60
          ||||||||||||||||| ||||||||||||||||||| ||||||  ||| ||||||||||
Sbjct: 2  tgaggccttaaagtactgtagcagcacatcatggtttacatgctacagtcaagatgcgaa 61

                                         
Query: 61 tcattatttgctgctttagaaatttaaggaa 91
          ||||||||||||||| |||||||||||||||
Sbjct: 62 tcattatttgctgctctagaaatttaaggaa 92




>30043_ppa-mir-15b:mirbase
          Length = 98

 Score =  133 bits (67), Expect = 2e-32
 Identities = 85/91 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgaggccttaaagtactctagcagcacatcatggtttgcatgctgtagtgaagatgcgaa 60
          ||||||||||||||||| ||||||||||||||||||| ||||||  ||| ||||||||||
Sbjct: 2  tgaggccttaaagtactgtagcagcacatcatggtttacatgctacagtcaagatgcgaa 61

                                         
Query: 61 tcattatttgctgctttagaaatttaaggaa 91
          ||||||||||||||| |||||||||||||||
Sbjct: 62 tcattatttgctgctctagaaatttaaggaa 92




>30147_ptr-mir-15b:mirbase
          Length = 98

 Score =  133 bits (67), Expect = 2e-32
 Identities = 85/91 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgaggccttaaagtactctagcagcacatcatggtttgcatgctgtagtgaagatgcgaa 60
          ||||||||||||||||| ||||||||||||||||||| ||||||  ||| ||||||||||
Sbjct: 2  tgaggccttaaagtactgtagcagcacatcatggtttacatgctacagtcaagatgcgaa 61

                                         
Query: 61 tcattatttgctgctttagaaatttaaggaa 91
          ||||||||||||||| |||||||||||||||
Sbjct: 62 tcattatttgctgctctagaaatttaaggaa 92




>30752_ppy-mir-15b:mirbase
          Length = 98

 Score =  133 bits (67), Expect = 2e-32
 Identities = 85/91 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgaggccttaaagtactctagcagcacatcatggtttgcatgctgtagtgaagatgcgaa 60
          ||||||||||||||||| ||||||||||||||||||| ||||||  ||| ||||||||||
Sbjct: 2  tgaggccttaaagtactgtagcagcacatcatggtttacatgctacagtcaagatgcgaa 61

                                         
Query: 61 tcattatttgctgctttagaaatttaaggaa 91
          ||||||||||||||| |||||||||||||||
Sbjct: 62 tcattatttgctgctctagaaatttaaggaa 92




>27479_age-mir-15b:mirbase
          Length = 98

 Score =  125 bits (63), Expect = 6e-30
 Identities = 84/91 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgaggccttaaagtactctagcagcacatcatggtttgcatgctgtagtgaagatgcgaa 60
          ||||||||||||||||| ||||||||||||||||||| ||| ||  ||| ||||||||||
Sbjct: 2  tgaggccttaaagtactgtagcagcacatcatggtttacatactacagtcaagatgcgaa 61

                                         
Query: 61 tcattatttgctgctttagaaatttaaggaa 91
          ||||||||||||||| |||||||||||||||
Sbjct: 62 tcattatttgctgctctagaaatttaaggaa 92




>27540_lla-mir-15b:mirbase
          Length = 98

 Score =  125 bits (63), Expect = 6e-30
 Identities = 84/91 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgaggccttaaagtactctagcagcacatcatggtttgcatgctgtagtgaagatgcgaa 60
          ||||||||||||||||| ||||||||||||||||||| ||| ||  ||| ||||||||||
Sbjct: 2  tgaggccttaaagtactgtagcagcacatcatggtttacatactacagtcaagatgcgaa 61

                                         
Query: 61 tcattatttgctgctttagaaatttaaggaa 91
          ||||||||||||||| |||||||||||||||
Sbjct: 62 tcattatttgctgctctagaaatttaaggaa 92




>27651_mml-mir-15b:mirbase
          Length = 98

 Score =  125 bits (63), Expect = 6e-30
 Identities = 84/91 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgaggccttaaagtactctagcagcacatcatggtttgcatgctgtagtgaagatgcgaa 60
          ||||||||||||||||| ||||||||||||||||||| ||| ||  ||| ||||||||||
Sbjct: 2  tgaggccttaaagtactgtagcagcacatcatggtttacatactacagtcaagatgcgaa 61

                                         
Query: 61 tcattatttgctgctttagaaatttaaggaa 91
          ||||||||||||||| |||||||||||||||
Sbjct: 62 tcattatttgctgctctagaaatttaaggaa 92




>28171_mne-mir-15b:mirbase
          Length = 98

 Score =  125 bits (63), Expect = 6e-30
 Identities = 84/91 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgaggccttaaagtactctagcagcacatcatggtttgcatgctgtagtgaagatgcgaa 60
          ||||||||||||||||| ||||||||||||||||||| ||| ||  ||| ||||||||||
Sbjct: 2  tgaggccttaaagtactgtagcagcacatcatggtttacatactacagtcaagatgcgaa 61

                                         
Query: 61 tcattatttgctgctttagaaatttaaggaa 91
          ||||||||||||||| |||||||||||||||
Sbjct: 62 tcattatttgctgctctagaaatttaaggaa 92




>33129_bta-mir-15b:mirbase
          Length = 98

 Score =  117 bits (59), Expect = 1e-27
 Identities = 83/91 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgaggccttaaagtactctagcagcacatcatggtttgcatgctgtagtgaagatgcgaa 60
          |||| |||||||||||| ||||||||||||||||||| ||| ||  ||| ||||||||||
Sbjct: 2  tgagaccttaaagtactgtagcagcacatcatggtttacatactacagtcaagatgcgaa 61

                                         
Query: 61 tcattatttgctgctttagaaatttaaggaa 91
          ||||||||||||||| |||||||||||||||
Sbjct: 62 tcattatttgctgctctagaaatttaaggaa 92




>33912_ssc-mir-15b:mirbase
          Length = 98

 Score =  117 bits (59), Expect = 1e-27
 Identities = 83/91 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgaggccttaaagtactctagcagcacatcatggtttgcatgctgtagtgaagatgcgaa 60
          ||||||||||||||||| ||||||||||||||||||| ||| ||  | | ||||||||||
Sbjct: 2  tgaggccttaaagtactgtagcagcacatcatggtttacatactacaatcaagatgcgaa 61

                                         
Query: 61 tcattatttgctgctttagaaatttaaggaa 91
          ||||||||||||||| |||||||||||||||
Sbjct: 62 tcattatttgctgctctagaaatttaaggaa 92




>32658_rno-mir-15b:mirbase
          Length = 98

 Score =  115 bits (58), Expect = 6e-27
 Identities = 79/86 (91%)
 Strand = Plus / Plus

                                                                      
Query: 6  ccttaaagtactctagcagcacatcatggtttgcatgctgtagtgaagatgcgaatcatt 65
          |||||||||||| ||||||||||||||||||| ||| ||  ||| |||||||||||||||
Sbjct: 7  ccttaaagtactgtagcagcacatcatggtttacatactacagtcaagatgcgaatcatt 66

                                    
Query: 66 atttgctgctttagaaatttaaggaa 91
          |||||||||| |||||||||||||||
Sbjct: 67 atttgctgctctagaaatttaaggaa 92




>31426_oan-mir-15b:mirbase
          Length = 130

 Score =  113 bits (57), Expect = 2e-26
 Identities = 69/73 (94%)
 Strand = Plus / Plus

                                                                       
Query: 19  tagcagcacatcatggtttgcatgctgtagtgaagatgcgaatcattatttgctgcttta 78
           |||||||||||||||||||||||| | |||  ||||||||||||||||||||||||||||
Sbjct: 31  tagcagcacatcatggtttgcatggtatagccaagatgcgaatcattatttgctgcttta 90

                        
Query: 79  gaaatttaaggaa 91
           |||||||||||||
Sbjct: 91  gaaatttaaggaa 103




>26624_cfa-mir-15b:mirbase
          Length = 60

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                   
Query: 19 tagcagcacatcatggtttgcatgctgtagtgaagatgcgaatcattatttgctgct 75
          ||||||||||||||||||| ||| ||  ||| |||||||||||||||||||||||||
Sbjct: 1  tagcagcacatcatggtttacatactacagtcaagatgcgaatcattatttgctgct 57




>26946_eca-mir-15b:mirbase
          Length = 64

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                   
Query: 19 tagcagcacatcatggtttgcatgctgtagtgaagatgcgaatcattatttgctgct 75
          ||||||||||||||||||| ||| ||  ||| |||||||||||||||||||||||||
Sbjct: 4  tagcagcacatcatggtttacatactacagtcaagatgcgaatcattatttgctgct 60




>31776_mmu-mir-15b:mirbase
          Length = 64

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                   
Query: 19 tagcagcacatcatggtttgcatgctgtagtgaagatgcgaatcattatttgctgct 75
          ||||||||||||||||||| ||| ||  ||| |||||||||||||||||||||||||
Sbjct: 4  tagcagcacatcatggtttacatactacagtcaagatgcgaatcattatttgctgct 60




>25698_xtr-mir-15b:mirbase
          Length = 88

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                    
Query: 19 tagcagcacatcatggtttgcatgctgtagtgaagatgcgaatcattatttgctgctt 76
          ||||||||||||||| ||||||||||||| |  |||| | ||||||| ||||||||||
Sbjct: 16 tagcagcacatcatgatttgcatgctgtattatagattctaatcattttttgctgctt 73




>26397_tgu-mir-15b:mirbase
          Length = 71

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 19 tagcagcacatcatggtttgcatgct 44
          ||||||||||||||||||||||||||
Sbjct: 11 tagcagcacatcatggtttgcatgct 36




>25655_xla-mir-15c:mirbase
          Length = 74

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 17 tctagcagcacatcatggtttg 38
          ||||||||||||||||||||||
Sbjct: 12 tctagcagcacatcatggtttg 33




>25699_xtr-mir-15c:mirbase
          Length = 74

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 17 tctagcagcacatcatggtttg 38
          ||||||||||||||||||||||
Sbjct: 12 tctagcagcacatcatggtttg 33




>34694_tni-mir-15b:mirbase
          Length = 91

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 66 atttgctgctttagaaatttaaggaa 91
          |||||||||||||||| |||||||||
Sbjct: 66 atttgctgctttagaattttaaggaa 91




>25893_gga-mir-15c:mirbase
          Length = 76

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 19 tagcagcacatcatggtttg 38
          ||||||||||||||||||||
Sbjct: 11 tagcagcacatcatggtttg 30




>26398_tgu-mir-15c:mirbase
          Length = 82

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 19 tagcagcacatcatggtttg 38
          ||||||||||||||||||||
Sbjct: 14 tagcagcacatcatggtttg 33




>31427_oan-mir-15c:mirbase
          Length = 116

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 19 tagcagcacatcatggtttg 38
          ||||||||||||||||||||
Sbjct: 28 tagcagcacatcatggtttg 47




>34204_dre-mir-15b:mirbase
          Length = 134

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 19 tagcagcacatcatggtttg 38
          ||||||||||||||||||||
Sbjct: 39 tagcagcacatcatggtttg 58