miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26399_tgu-mir-16a:mirbase
Length = 92
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 4 tgtcatactctagcagcacgtaaatattggtgttaaaactgtaaatatctccagtattaa 63
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tgtcatactttagcagcacgtaaatattggtgttaagactgtaaatatctccagtattaa 60
Query: 64 ctgtgctgctgaagtaaggct 84
|||||||||||||||||||||
Sbjct: 61 ctgtgctgctgaagtaaggct 81
>33130_bta-mir-16a:mirbase
Length = 89
Score = 95.6 bits (48), Expect = 5e-21
Identities = 66/71 (92%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 71
|||||||||||||||||||||||||| | | |||| |||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggtgttaagattctaaaattatctccagtattaactgtgctg 73
Query: 72 ctgaagtaagg 82
|||||||||||
Sbjct: 74 ctgaagtaagg 84
>31428_oan-mir-16a:mirbase
Length = 132
Score = 91.7 bits (46), Expect = 7e-20
Identities = 67/73 (91%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 71
|||||||||||||||||||| ||||| ||| |||| ||||||||||||| |||||||||
Sbjct: 29 tagcagcacgtaaatattggcgttaagactctaaaagtatctccagtattgactgtgctg 88
Query: 72 ctgaagtaaggct 84
|||||||||||||
Sbjct: 89 ctgaagtaaggct 101
>27334_mdo-mir-16:mirbase
Length = 90
Score = 87.7 bits (44), Expect = 1e-18
Identities = 65/71 (91%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 71
|||||||||||||||||||| ||||| | | |||| |||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgttaagattttaaaagtatctccagtattaactgtgctg 73
Query: 72 ctgaagtaagg 82
|||||||||||
Sbjct: 74 ctgaagtaagg 84
>27480_age-mir-16:mirbase
Length = 89
Score = 87.7 bits (44), Expect = 1e-18
Identities = 65/71 (91%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 71
|||||||||||||||||||| ||||| | | |||| |||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 73
Query: 72 ctgaagtaagg 82
|||||||||||
Sbjct: 74 ctgaagtaagg 84
>27589_sla-mir-16:mirbase
Length = 89
Score = 87.7 bits (44), Expect = 1e-18
Identities = 65/71 (91%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 71
|||||||||||||||||||| ||||| | | |||| |||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 73
Query: 72 ctgaagtaagg 82
|||||||||||
Sbjct: 74 ctgaagtaagg 84
>27652_mml-mir-16-1:mirbase
Length = 89
Score = 87.7 bits (44), Expect = 1e-18
Identities = 65/71 (91%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 71
|||||||||||||||||||| ||||| | | |||| |||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 73
Query: 72 ctgaagtaagg 82
|||||||||||
Sbjct: 74 ctgaagtaagg 84
>28172_mne-mir-16:mirbase
Length = 89
Score = 87.7 bits (44), Expect = 1e-18
Identities = 65/71 (91%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 71
|||||||||||||||||||| ||||| | | |||| |||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 73
Query: 72 ctgaagtaagg 82
|||||||||||
Sbjct: 74 ctgaagtaagg 84
>28260_ggo-mir-16:mirbase
Length = 89
Score = 87.7 bits (44), Expect = 1e-18
Identities = 65/71 (91%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 71
|||||||||||||||||||| ||||| | | |||| |||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 73
Query: 72 ctgaagtaagg 82
|||||||||||
Sbjct: 74 ctgaagtaagg 84
>28362_hsa-mir-16-1:mirbase
Length = 89
Score = 87.7 bits (44), Expect = 1e-18
Identities = 65/71 (91%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 71
|||||||||||||||||||| ||||| | | |||| |||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 73
Query: 72 ctgaagtaagg 82
|||||||||||
Sbjct: 74 ctgaagtaagg 84
>30044_ppa-mir-16:mirbase
Length = 89
Score = 87.7 bits (44), Expect = 1e-18
Identities = 65/71 (91%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 71
|||||||||||||||||||| ||||| | | |||| |||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 73
Query: 72 ctgaagtaagg 82
|||||||||||
Sbjct: 74 ctgaagtaagg 84
>30148_ptr-mir-16-1:mirbase
Length = 89
Score = 87.7 bits (44), Expect = 1e-18
Identities = 65/71 (91%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 71
|||||||||||||||||||| ||||| | | |||| |||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 73
Query: 72 ctgaagtaagg 82
|||||||||||
Sbjct: 74 ctgaagtaagg 84
>30753_ppy-mir-16:mirbase
Length = 89
Score = 87.7 bits (44), Expect = 1e-18
Identities = 65/71 (91%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 71
|||||||||||||||||||| ||||| | | |||| |||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 73
Query: 72 ctgaagtaagg 82
|||||||||||
Sbjct: 74 ctgaagtaagg 84
>33914_ssc-mir-16-2:mirbase
Length = 79
Score = 87.7 bits (44), Expect = 1e-18
Identities = 65/71 (91%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 71
|||||||||||||||||||| ||||| | | |||| |||||||||||||||||||||||
Sbjct: 9 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 68
Query: 72 ctgaagtaagg 82
|||||||||||
Sbjct: 69 ctgaagtaagg 79
>27541_lla-mir-16:mirbase
Length = 89
Score = 79.8 bits (40), Expect = 3e-16
Identities = 64/71 (90%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 71
|||||||||||||||||||| | ||| | | |||| |||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgctaagattctaaaattatctccagtattaactgtgctg 73
Query: 72 ctgaagtaagg 82
|||||||||||
Sbjct: 74 ctgaagtaagg 84
>26625_cfa-mir-16-1:mirbase
Length = 65
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/65 (90%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 71
|||||||||||||||||||| ||||| | | |||| |||||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 60
Query: 72 ctgaa 76
|||||
Sbjct: 61 ctgaa 65
>26948_eca-mir-16-2:mirbase
Length = 63
Score = 71.9 bits (36), Expect = 7e-14
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 71
|||||||||||||||||||| ||||| | | |||| |||||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 60
Query: 72 ctg 74
|||
Sbjct: 61 ctg 63
>31777_mmu-mir-16-1:mirbase
Length = 93
Score = 71.9 bits (36), Expect = 7e-14
Identities = 63/71 (88%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaaa--ctgtaaatatctccagtattaactgtgctg 71
|||||||||||||||||||| ||||| | ||| || || |||||||||| |||||||||
Sbjct: 16 tagcagcacgtaaatattggcgttaagattctgaaattacctccagtattgactgtgctg 75
Query: 72 ctgaagtaagg 82
|||||||||||
Sbjct: 76 ctgaagtaagg 86
>25700_xtr-mir-16a:mirbase
Length = 82
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaaa 41
||||||||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggtgttaaaa 41
>31394_lca-mir-16:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaa 39
||||||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggtgttaa 39
>31429_oan-mir-16b:mirbase
Length = 101
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 ctctagcagcacgtaaatattggtgt 36
||||||||||||||||||||||||||
Sbjct: 18 ctctagcagcacgtaaatattggtgt 43
>25895_gga-mir-16-2:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 ctagcagcacgtaaatattggtgt 36
||||||||||||||||||||||||
Sbjct: 16 ctagcagcacgtaaatattggtgt 39
>27653_mml-mir-16-2:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 actctagcagcacgtaaatattgg 33
||||||||||||||||||||||||
Sbjct: 6 actctagcagcacgtaaatattgg 29
>28363_hsa-mir-16-2:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 actctagcagcacgtaaatattgg 33
||||||||||||||||||||||||
Sbjct: 6 actctagcagcacgtaaatattgg 29
>30149_ptr-mir-16-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 actctagcagcacgtaaatattgg 33
||||||||||||||||||||||||
Sbjct: 5 actctagcagcacgtaaatattgg 28
>30754_ppy-mir-16-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 actctagcagcacgtaaatattgg 33
||||||||||||||||||||||||
Sbjct: 6 actctagcagcacgtaaatattgg 29
>31778_mmu-mir-16-2:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 actctagcagcacgtaaatattgg 33
||||||||||||||||||||||||
Sbjct: 13 actctagcagcacgtaaatattgg 36
>26947_eca-mir-16:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ctctagcagcacgtaaatattgg 33
|||||||||||||||||||||||
Sbjct: 7 ctctagcagcacgtaaatattgg 29
>32659_rno-mir-16:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ctctagcagcacgtaaatattgg 33
|||||||||||||||||||||||
Sbjct: 14 ctctagcagcacgtaaatattgg 36
>33913_ssc-mir-16-1:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ctctagcagcacgtaaatattgg 33
|||||||||||||||||||||||
Sbjct: 5 ctctagcagcacgtaaatattgg 27
>34206_dre-mir-16a:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgt 36
|||||||||||||||||||||||
Sbjct: 13 tagcagcacgtaaatattggtgt 35
>34547_fru-mir-16:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaa 39
|||||||||||||||||||| |||||
Sbjct: 13 tagcagcacgtaaatattggagttaa 38
>34695_tni-mir-16:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaa 39
|||||||||||||||||||| |||||
Sbjct: 1 tagcagcacgtaaatattggagttaa 26
>26400_tgu-mir-16b:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 ctagcagcacgtaaatattgg 33
|||||||||||||||||||||
Sbjct: 10 ctagcagcacgtaaatattgg 30
>25429_pma-mir-16:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattgg 33
||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29
>25701_xtr-mir-16b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattgg 33
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>26626_cfa-mir-16-2:mirbase
Length = 65
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattgg 33
||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattgg 20
>33131_bta-mir-16b:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattgg 33
||||||||||||||||||||
Sbjct: 17 tagcagcacgtaaatattgg 36
>34207_dre-mir-16b:mirbase
Length = 140
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattgg 33
||||||||||||||||||||
Sbjct: 39 tagcagcacgtaaatattgg 58
>25896_gga-mir-16c:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 11 ctctagcagcacgtaaata 29
|||||||||||||||||||
Sbjct: 2 ctctagcagcacgtaaata 20
>26401_tgu-mir-16c:mirbase
Length = 72
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 11 ctctagcagcacgtaaata 29
|||||||||||||||||||
Sbjct: 8 ctctagcagcacgtaaata 26
