miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26628_cfa-mir-18a:mirbase
Length = 92
Score = 174 bits (88), Expect = 7e-45
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 1 gtgctttttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgcc 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgctttttgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgcc 60
Query: 61 ctaagtgctccttctggcataagaagttatgt 92
||||||||||||||||||||||||||||||||
Sbjct: 61 ctaagtgctccttctggcataagaagttatgt 92
>33917_ssc-mir-18a:mirbase
Length = 92
Score = 174 bits (88), Expect = 7e-45
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 1 gtgctttttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgcc 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgctttttgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgcc 60
Query: 61 ctaagtgctccttctggcataagaagttatgt 92
||||||||||||||||||||||||||||||||
Sbjct: 61 ctaagtgctccttctggcataagaagttatgt 92
>31780_mmu-mir-18a:mirbase
Length = 96
Score = 168 bits (85), Expect = 4e-43
Identities = 91/93 (97%)
Strand = Plus / Plus
Query: 1 gtgctttttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgcc 60
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4 gtgctttttgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgcc 63
Query: 61 ctaagtgctccttctggcataagaagttatgtc 93
|||||||||||||||||||||||||||||||||
Sbjct: 64 ctaagtgctccttctggcataagaagttatgtc 96
>32664_rno-mir-18a:mirbase
Length = 96
Score = 168 bits (85), Expect = 4e-43
Identities = 91/93 (97%)
Strand = Plus / Plus
Query: 1 gtgctttttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgcc 60
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4 gtgctttttgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgcc 63
Query: 61 ctaagtgctccttctggcataagaagttatgtc 93
|||||||||||||||||||||||||||||||||
Sbjct: 64 ctaagtgctccttctggcataagaagttatgtc 96
>25705_xtr-mir-18a:mirbase
Length = 87
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 1 gtgctttttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgcc 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgctttttgtcctaaggtgcatctagtgcagatagtgaagtagattagcatctactgcc 60
Query: 61 ctaagtgctccttctggcataagaagt 87
|||||||||||||||||||||| ||||
Sbjct: 61 ctaagtgctccttctggcataaaaagt 87
>26404_tgu-mir-18a:mirbase
Length = 72
Score = 143 bits (72), Expect = 3e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 4 ctttttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgcccta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgcccta 60
Query: 64 agtgctccttct 75
||||||||||||
Sbjct: 61 agtgctccttct 72
>27337_mdo-mir-18:mirbase
Length = 72
Score = 135 bits (68), Expect = 6e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 8 ttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtg 67
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtg 60
Query: 68 ctccttctggca 79
||||||||||||
Sbjct: 61 ctccttctggca 72
>27483_age-mir-18:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 73 tctggca 79
|||||||
Sbjct: 65 tctggca 71
>27544_lla-mir-18:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 73 tctggca 79
|||||||
Sbjct: 65 tctggca 71
>27592_sla-mir-18:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 73 tctggca 79
|||||||
Sbjct: 65 tctggca 71
>27656_mml-mir-18:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 73 tctggca 79
|||||||
Sbjct: 65 tctggca 71
>28175_mne-mir-18:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 73 tctggca 79
|||||||
Sbjct: 65 tctggca 71
>28263_ggo-mir-18:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 73 tctggca 79
|||||||
Sbjct: 65 tctggca 71
>28365_hsa-mir-18a:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 73 tctggca 79
|||||||
Sbjct: 65 tctggca 71
>30047_ppa-mir-18:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 73 tctggca 79
|||||||
Sbjct: 65 tctggca 71
>30152_ptr-mir-18a:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 73 tctggca 79
|||||||
Sbjct: 65 tctggca 71
>30757_ppy-mir-18:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 73 tctggca 79
|||||||
Sbjct: 65 tctggca 71
>31397_lca-mir-18:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 73 tctggca 79
|||||||
Sbjct: 65 tctggca 71
>33134_bta-mir-18a:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 73 tctggca 79
|||||||
Sbjct: 65 tctggca 71
>26950_eca-mir-18a:mirbase
Length = 61
Score = 121 bits (61), Expect = 9e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 60
Query: 74 c 74
|
Sbjct: 61 c 61
>34211_dre-mir-18a:mirbase
Length = 83
Score = 121 bits (61), Expect = 9e-29
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 7 tttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagt 66
||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 4 tttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagt 63
Query: 67 gctccttctggca 79
|||||||||||||
Sbjct: 64 gctccttctggca 76
>34550_fru-mir-18:mirbase
Length = 76
Score = 119 bits (60), Expect = 4e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 8 ttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtg 67
|||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
Query: 68 ctccttctggcataag 83
||||||||||||||||
Sbjct: 61 ctccttctggcataag 76
>34698_tni-mir-18:mirbase
Length = 76
Score = 119 bits (60), Expect = 4e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 8 ttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtg 67
|||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
Query: 68 ctccttctggcataag 83
||||||||||||||||
Sbjct: 61 ctccttctggcataag 76
>34212_dre-mir-18b:mirbase
Length = 87
Score = 101 bits (51), Expect = 9e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 72
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
Query: 73 tctggcataag 83
|||||||||||
Sbjct: 72 tctggcataag 82
>31432_oan-mir-18:mirbase
Length = 130
Score = 99.6 bits (50), Expect = 3e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
||||||||||||||||||| ||||||||||| |||| |||||||||||||| ||||||||
Sbjct: 29 taaggtgcatctagtgcagttagtgaagtagcttagaatctactgccctaaatgctcctt 88
Query: 74 ctggca 79
||||||
Sbjct: 89 ctggca 94
>25900_gga-mir-18b:mirbase
Length = 84
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 15 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 74
Query: 74 ctggca 79
||||||
Sbjct: 75 ctggca 80
>27657_mml-mir-18b:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
||||||||||||||||||| |||||||| || |||| |||||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccctt 65
Query: 74 ctggca 79
||||||
Sbjct: 66 ctggca 71
>28366_hsa-mir-18b:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
||||||||||||||||||| |||||||| || |||| |||||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccctt 65
Query: 74 ctggca 79
||||||
Sbjct: 66 ctggca 71
>30758_ppy-mir-18b:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
||||||||||||||||||| |||||||| || |||| |||||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccctt 65
Query: 74 ctggca 79
||||||
Sbjct: 66 ctggca 71
>33135_bta-mir-18b:mirbase
Length = 75
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
Query: 74 ctggca 79
||||||
Sbjct: 68 ctggca 73
>33918_ssc-mir-18b:mirbase
Length = 83
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
||||||||||||||||||| |||||||| || |||| |||||||||||||| ||| ||||
Sbjct: 11 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccctt 70
Query: 74 ctggca 79
||||||
Sbjct: 71 ctggca 76
>25656_xla-mir-18:mirbase
Length = 79
Score = 75.8 bits (38), Expect = 5e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
Query: 74 ctggca 79
|||||
Sbjct: 69 ttggca 74
>25706_xtr-mir-18b:mirbase
Length = 78
Score = 75.8 bits (38), Expect = 5e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 9 taaggtgcatctagtgcagttagtgacatagtgtagcatctactgccctaaatgctcctt 68
Query: 74 ctggca 79
|||||
Sbjct: 69 ttggca 74
>30153_ptr-mir-18b:mirbase
Length = 70
Score = 73.8 bits (37), Expect = 2e-14
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
||||||||||||||||||| |||||||| || |||| |||||||||||||| ||| || |
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgccccat 65
Query: 74 ctggc 78
|||||
Sbjct: 66 ctggc 70
>26951_eca-mir-18b:mirbase
Length = 59
Score = 69.9 bits (35), Expect = 3e-13
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaa 64
||||||||||||||||||| |||||||| || |||| ||||||||||||||
Sbjct: 1 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaa 51
>26629_cfa-mir-18b:mirbase
Length = 77
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
||||||||||||||||||| |||||||| | |||| | |||||||||||| ||| ||||
Sbjct: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
Query: 74 ctggca 79
| ||||
Sbjct: 68 ccggca 73
>31781_mmu-mir-18b:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 3e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
||||||||||||||||| | |||||||| || ||| |||||||||||||| ||| ||||
Sbjct: 11 taaggtgcatctagtgctgttagtgaagcagcttacaatctactgccctaaatgcccctt 70
Query: 74 ct 75
||
Sbjct: 71 ct 72
>25433_pma-mir-18a:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 8 ttgtactaaggtgcatctagtgcagatagt 37
|||| |||||||||||||||||||||||||
Sbjct: 12 ttgtgctaaggtgcatctagtgcagatagt 41
>26405_tgu-mir-18b:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 14 taaggtgcatctagtgcagatagtgaagtag 44
||||||||||||||||||| |||||| ||||
Sbjct: 101 taaggtgcatctagtgcagttagtgatgtag 131
>34213_dre-mir-18c:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 59
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
>25434_pma-mir-18b:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 aaggtgcatctagtgcagatagtg 38
||||||||| ||||||||||||||
Sbjct: 16 aaggtgcatttagtgcagatagtg 39
