miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26410_tgu-mir-20b:mirbase
Length = 73
Score = 129 bits (65), Expect = 3e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 1 ctagcagtatcaaagtgctcatagtgcaggtagcttggcattggacctactgtaatgtgg 60
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 1 ctagcagtatcaaagtgctcatagtgcaggtagcttggaaatggacctactgtaatgtgg 60
Query: 61 gcacttacagtac 73
|||||||||||||
Sbjct: 61 gcacttacagtac 73
>26956_eca-mir-20b:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 4e-09
Identities = 63/71 (88%), Gaps = 4/71 (5%)
Strand = Plus / Plus
Query: 6 agtatcaaagtgctcatagtgcaggtag-cttggcattggac-ctactgtaatgtgggca 63
|||| ||||||||||||||||||||||| |||||||| || |||||||| ||||||||
Sbjct: 1 agtaccaaagtgctcatagtgcaggtagttttggcatt--actctactgtagtgtgggca 58
Query: 64 cttacagtact 74
||| |||||||
Sbjct: 59 cttccagtact 69
>27662_mml-mir-20b:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 4e-09
Identities = 63/71 (88%), Gaps = 4/71 (5%)
Strand = Plus / Plus
Query: 6 agtatcaaagtgctcatagtgcaggtag-cttggcattggac-ctactgtaatgtgggca 63
|||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||
Sbjct: 1 agtaccaaagtgctcatagtgcaggtagttttggcat--gactctactgtagtgtgggca 58
Query: 64 cttacagtact 74
||| |||||||
Sbjct: 59 cttccagtact 69
>31437_oan-mir-20b:mirbase
Length = 106
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 ctactgtaatgtgggcacttacagtact 74
||||||||||||||||||||||||||||
Sbjct: 63 ctactgtaatgtgggcacttacagtact 90
>25658_xla-mir-20:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 47 ctactgtaatgtgggcacttacagtactg 75
|||||||||| ||||||||||||||||||
Sbjct: 44 ctactgtaatatgggcacttacagtactg 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 caaagtgctcatagtgcaggtag 33
|||||||||||||||||||||||
Sbjct: 8 caaagtgctcatagtgcaggtag 30
>25711_xtr-mir-20b:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 47 ctactgtaatgtgggcacttacagtactg 75
|||||||||| ||||||||||||||||||
Sbjct: 44 ctactgtaatatgggcacttacagtactg 72
>28371_hsa-mir-20b:mirbase
Length = 69
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 agtatcaaagtgctcatagtgcaggtag 33
|||| |||||||||||||||||||||||
Sbjct: 1 agtaccaaagtgctcatagtgcaggtag 28
>30158_ptr-mir-20b:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 agtatcaaagtgctcatagtgcaggtag 33
|||| |||||||||||||||||||||||
Sbjct: 1 agtaccaaagtgctcatagtgcaggtag 28
>30763_ppy-mir-20b:mirbase
Length = 69
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 agtatcaaagtgctcatagtgcaggtag 33
|||| |||||||||||||||||||||||
Sbjct: 1 agtaccaaagtgctcatagtgcaggtag 28
>31786_mmu-mir-20b:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 caaagtgctcatagtgcaggtag 33
|||||||||||||||||||||||
Sbjct: 12 caaagtgctcatagtgcaggtag 34
>32669_rno-mir-20b:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 caaagtgctcatagtgcaggtag 33
|||||||||||||||||||||||
Sbjct: 8 caaagtgctcatagtgcaggtag 30
>32670_rno-mir-20b:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 caaagtgctcatagtgcaggtag 33
|||||||||||||||||||||||
Sbjct: 8 caaagtgctcatagtgcaggtag 30
>34553_fru-mir-20:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 3 agcagtatcaaagtgctcatagtgcaggtag 33
|||||||| |||||||| |||||||||||||
Sbjct: 1 agcagtattaaagtgcttatagtgcaggtag 31
>34701_tni-mir-20:mirbase
Length = 73
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 gcagtatcaaagtgctcatagtgcaggtag 33
||||||| |||||||| |||||||||||||
Sbjct: 1 gcagtattaaagtgcttatagtgcaggtag 30
>33140_bta-mir-20b:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 6 agtatcaaagtgctcatagtgcaggtag 33
|||| ||||||||||| |||||||||||
Sbjct: 1 agtaccaaagtgctcacagtgcaggtag 28
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 47 ctactgtaatgtgggcacttacagtact 74
|||||||| ||||||||||| |||||||
Sbjct: 42 ctactgtagtgtgggcacttccagtact 69
>25438_pma-mir-20a:mirbase
Length = 91
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 caaagtgctcatagtgcaggtag 33
||||||||| |||||||||||||
Sbjct: 16 caaagtgcttatagtgcaggtag 38
>25439_pma-mir-20b:mirbase
Length = 94
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 caaagtgctcatagtgcaggtag 33
||||||||| |||||||||||||
Sbjct: 18 caaagtgctgatagtgcaggtag 40
>26634_cfa-mir-20b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 caaagtgctcatagtgcaggtag 33
||||||||||| |||||||||||
Sbjct: 5 caaagtgctcacagtgcaggtag 27
>27002_eca-mir-106a:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 10 tcaaagtgctcatagtgcaggtagctt 36
|||||||||| | ||||||||||||||
Sbjct: 12 tcaaagtgcttacagtgcaggtagctt 38
>31834_mmu-mir-106a:mirbase
Length = 65
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 10 tcaaagtgctcatagtgcaggtagctt 36
|||||||||| | ||||||||||||||
Sbjct: 4 tcaaagtgctaacagtgcaggtagctt 30
>32662_rno-mir-17-2:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 10 tcaaagtgctcatagtgcaggtagctt 36
|||||||||| | ||||||||||||||
Sbjct: 10 tcaaagtgcttacagtgcaggtagctt 36
>32663_rno-mir-17-2:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 10 tcaaagtgctcatagtgcaggtagctt 36
|||||||||| | ||||||||||||||
Sbjct: 10 tcaaagtgcttacagtgcaggtagctt 36
>34219_dre-mir-20b:mirbase
Length = 94
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 caaagtgctcatagtgcaggtag 33
||||||||||| |||||||||||
Sbjct: 20 caaagtgctcacagtgcaggtag 42
