miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25715_xtr-mir-23b:mirbase
Length = 88
Score = 135 bits (68), Expect = 6e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 4 tgtggctgtttgggttcctggcatgatgatttgtgagttaagattaaaatcacattgcca 63
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5 tgtggctgtttgggttcctggcatgctgatttgtgagttaagattaaaatcacattgcca 64
Query: 64 gggattaccaca 75
||||||||||||
Sbjct: 65 gggattaccaca 76
>26412_tgu-mir-23:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 12 tttgggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagggattac 71
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 tttgggttcctggcatgatgatttgtgacttaagattaaaatcacattgccagggattac 60
Query: 72 cac 74
|||
Sbjct: 61 cac 63
>27666_mml-mir-23b:mirbase
Length = 97
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 6 tggctgtttgggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagg 65
|||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 12 tggctgcttgggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagg 71
Query: 66 gattaccac 74
|||||||||
Sbjct: 72 gattaccac 80
>28375_hsa-mir-23b:mirbase
Length = 97
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 6 tggctgtttgggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagg 65
|||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 12 tggctgcttgggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagg 71
Query: 66 gattaccac 74
|||||||||
Sbjct: 72 gattaccac 80
>30055_ppa-mir-23b:mirbase
Length = 97
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 6 tggctgtttgggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagg 65
|||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 12 tggctgcttgggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagg 71
Query: 66 gattaccac 74
|||||||||
Sbjct: 72 gattaccac 80
>30162_ptr-mir-23b:mirbase
Length = 97
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 6 tggctgtttgggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagg 65
|||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 12 tggctgcttgggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagg 71
Query: 66 gattaccac 74
|||||||||
Sbjct: 72 gattaccac 80
>30767_ppy-mir-23b:mirbase
Length = 97
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 6 tggctgtttgggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagg 65
|||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 12 tggctgcttgggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagg 71
Query: 66 gattaccac 74
|||||||||
Sbjct: 72 gattaccac 80
>33927_ssc-mir-23b:mirbase
Length = 80
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 6 tggctgtttgggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagg 65
|||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 4 tggctgcttgggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagg 63
Query: 66 gattaccac 74
|||||||||
Sbjct: 64 gattaccac 72
>26960_eca-mir-23b:mirbase
Length = 74
Score = 111 bits (56), Expect = 8e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 7 ggctgtttgggttcctggcatgatgatttgtgagttaagattaaaatcacattgccaggg 66
||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 1 ggctgcttgggttcctggcatgctgatttgtgacttaagattaaaatcacattgccaggg 60
Query: 67 attaccac 74
||||||||
Sbjct: 61 attaccac 68
>32674_rno-mir-23b:mirbase
Length = 97
Score = 105 bits (53), Expect = 5e-24
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 6 tggctgtttgggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagg 65
|||||| |||||||||||||||| |||||||||| || ||||||||||||||||||||||
Sbjct: 12 tggctgcttgggttcctggcatgctgatttgtgacttgagattaaaatcacattgccagg 71
Query: 66 gattaccac 74
|||||||||
Sbjct: 72 gattaccac 80
>27344_mdo-mir-23b:mirbase
Length = 74
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 7 ggctgtttgggttcctggcatgatgatttgtgagttaagattaaaatcacattgccaggg 66
||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||||||
Sbjct: 1 ggctgcttgggttcctggcatgctgatttgtgacttaagatgaaaatcacattgccaggg 60
Query: 67 attaccac 74
||||||||
Sbjct: 61 attaccac 68
>31790_mmu-mir-23b:mirbase
Length = 74
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 7 ggctgtttgggttcctggcatgatgatttgtgagttaagattaaaatcacattgccaggg 66
||||| |||||||||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct: 1 ggctgcttgggttcctggcatgctgatttgtgacttgagattaaaatcacattgccaggg 60
Query: 67 attaccac 74
||||||||
Sbjct: 61 attaccac 68
>33145_bta-mir-23b:mirbase
Length = 60
Score = 103 bits (52), Expect = 2e-23
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 15 gggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagggattaccac 74
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 gggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattaccac 60
>33146_bta-mir-23b:mirbase
Length = 60
Score = 103 bits (52), Expect = 2e-23
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 15 gggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagggattaccac 74
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 gggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattaccac 60
>26638_cfa-mir-23b:mirbase
Length = 54
Score = 91.7 bits (46), Expect = 8e-20
Identities = 52/54 (96%)
Strand = Plus / Plus
Query: 17 gttcctggcatgatgatttgtgagttaagattaaaatcacattgccagggatta 70
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 gttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggatta 54
>31441_oan-mir-23b:mirbase
Length = 109
Score = 81.8 bits (41), Expect = 7e-17
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 14 tgggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagggattacca 73
||||||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||
Sbjct: 25 tgggttcctggcatgctgatttgtgacttaagagaaaaatcacattgccagggataacca 84
Query: 74 c 74
|
Sbjct: 85 c 85
>34560_fru-mir-23b:mirbase
Length = 73
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 15 gggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagggattaccac 74
||||||||||| || |||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 9 gggttcctggcgtgctgatttgtgacttatgat-aaaatcacattgccagggattaccac 67
Query: 75 atagcc 80
| ||||
Sbjct: 68 acagcc 73
>34708_tni-mir-23b:mirbase
Length = 73
Score = 65.9 bits (33), Expect = 4e-12
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 15 gggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagggattaccac 74
||||||||||| || |||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 9 gggttcctggcgtgctgatttgtgacctatgat-aaaatcacattgccagggattaccac 67
Query: 75 a 75
|
Sbjct: 68 a 68
>34227_dre-mir-23b:mirbase
Length = 81
Score = 56.0 bits (28), Expect = 4e-09
Identities = 63/74 (85%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 5 gtggctgtttgggttcctggcatgatgatttgtgagttaag---attaaaatcacattgc 61
|||||||| ||||||| ||||||| |||||||||| | || | |||||||||||||
Sbjct: 1 gtggctgtgtgggttcttggcatgctgatttgtgactgtagtaaaaaaaaatcacattgc 60
Query: 62 cagggattaccaca 75
||||||||||||||
Sbjct: 61 cagggattaccaca 74
>25443_pma-mir-23b:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 aaaatcacattgccagggattaccac 74
||||||||||||||||||||||||||
Sbjct: 51 aaaatcacattgccagggattaccac 76
>25442_pma-mir-23a:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 aaaatcacattgccagggattacc 72
||||||||||||||||||||||||
Sbjct: 47 aaaatcacattgccagggattacc 70
>34224_dre-mir-23a-1:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 aaaatcacattgccagggattaccac 74
||||||||||||||||||||| ||||
Sbjct: 53 aaaatcacattgccagggatttccac 78
>34226_dre-mir-23a-3:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 48 taaaatcacattgccagggatt 69
||||||||||||||||||||||
Sbjct: 44 taaaatcacattgccagggatt 65
>34557_fru-mir-23a-1:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 aaaatcacattgccagggattaccac 74
||||||||||||||||||||| ||||
Sbjct: 53 aaaatcacattgccagggatttccac 78
>34705_tni-mir-23a-1:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 aaaatcacattgccagggattaccac 74
||||||||||||||||||||| ||||
Sbjct: 53 aaaatcacattgccagggatttccac 78
>25714_xtr-mir-23a-2:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 49 aaaatcacattgccagggatt 69
|||||||||||||||||||||
Sbjct: 49 aaaatcacattgccagggatt 69
>31440_oan-mir-23a:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 49 aaaatcacattgccagggatt 69
|||||||||||||||||||||
Sbjct: 50 aaaatcacattgccagggatt 70
>25659_xla-mir-23a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 49 aaatcacattgccagggatt 68
>25713_xtr-mir-23a-1:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 49 aaatcacattgccagggatt 68
>26637_cfa-mir-23a:mirbase
Length = 52
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 32 aaatcacattgccagggatt 51
>26959_eca-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>27343_mdo-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 40 aaatcacattgccagggatt 59
>27490_age-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>27598_sla-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>27665_mml-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>28182_mne-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>28269_ggo-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>28374_hsa-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>30054_ppa-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>30161_ptr-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>30766_ppy-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>31403_lca-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>31789_mmu-mir-23a:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatt 63
>32673_rno-mir-23a:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatt 63
>33144_bta-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>33926_ssc-mir-23a:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 40 aaatcacattgccagggatt 59
>34558_fru-mir-23a-2:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 46 aaatcacattgccagggatt 65
>34706_tni-mir-23a-2:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggatt 69
||||||||||||||||||||
Sbjct: 46 aaatcacattgccagggatt 65
>34225_dre-mir-23a-2:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 51 aatcacattgccagggatt 69
|||||||||||||||||||
Sbjct: 56 aatcacattgccagggatt 74
>34559_fru-mir-23a-3:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 51 aatcacattgccagggatt 69
|||||||||||||||||||
Sbjct: 52 aatcacattgccagggatt 70
>34707_tni-mir-23a-3:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 51 aatcacattgccagggatt 69
|||||||||||||||||||
Sbjct: 53 aatcacattgccagggatt 71
