miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26413_tgu-mir-24:mirbase
Length = 132
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 58 ctccggtgcctactgagctgatatcagttctgattttacacactggctcagttcagcagg 117
Query: 61 aacaggag 68
||||||||
Sbjct: 118 aacaggag 125
>26962_eca-mir-24-2:mirbase
Length = 68
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 61 aacaggag 68
||||||||
Sbjct: 61 aacaggag 68
>27667_mml-mir-24-1:mirbase
Length = 68
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 61 aacaggag 68
||||||||
Sbjct: 61 aacaggag 68
>28183_mne-mir-24-1:mirbase
Length = 68
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 61 aacaggag 68
||||||||
Sbjct: 61 aacaggag 68
>28377_hsa-mir-24-1:mirbase
Length = 68
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 61 aacaggag 68
||||||||
Sbjct: 61 aacaggag 68
>29230_hsa-mir-3074:mirbase
Length = 81
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Minus
Query: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 74 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 15
Query: 61 aacaggag 68
||||||||
Sbjct: 14 aacaggag 7
>29231_hsa-mir-3074:mirbase
Length = 81
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Minus
Query: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 74 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 15
Query: 61 aacaggag 68
||||||||
Sbjct: 14 aacaggag 7
>30056_ppa-mir-24-1:mirbase
Length = 68
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 61 aacaggag 68
||||||||
Sbjct: 61 aacaggag 68
>30768_ppy-mir-24-1:mirbase
Length = 68
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 61 aacaggag 68
||||||||
Sbjct: 61 aacaggag 68
>33147_bta-mir-24-1:mirbase
Length = 68
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 61 aacaggag 68
||||||||
Sbjct: 61 aacaggag 68
>33929_ssc-mir-24-2:mirbase
Length = 80
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 9 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 68
Query: 61 aacaggag 68
||||||||
Sbjct: 69 aacaggag 76
>30163_ptr-mir-24-1:mirbase
Length = 67
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 2 tccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagga 61
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 1 tccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagga 60
Query: 62 acaggag 68
|||||||
Sbjct: 61 acaggag 67
>31791_mmu-mir-24-1:mirbase
Length = 68
Score = 111 bits (56), Expect = 6e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
Query: 61 aacaggag 68
||||||||
Sbjct: 61 aacaggag 68
>32511_mmu-mir-3074-1:mirbase
Length = 85
Score = 111 bits (56), Expect = 6e-26
Identities = 65/68 (95%)
Strand = Plus / Minus
Query: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||
Sbjct: 76 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 17
Query: 61 aacaggag 68
||||||||
Sbjct: 16 aacaggag 9
>32512_mmu-mir-3074-1:mirbase
Length = 85
Score = 111 bits (56), Expect = 6e-26
Identities = 65/68 (95%)
Strand = Plus / Minus
Query: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||
Sbjct: 76 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 17
Query: 61 aacaggag 68
||||||||
Sbjct: 16 aacaggag 9
>32675_rno-mir-24-1:mirbase
Length = 68
Score = 111 bits (56), Expect = 6e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
Query: 61 aacaggag 68
||||||||
Sbjct: 61 aacaggag 68
>33024_rno-mir-3074:mirbase
Length = 117
Score = 111 bits (56), Expect = 6e-26
Identities = 65/68 (95%)
Strand = Plus / Minus
Query: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||
Sbjct: 89 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 30
Query: 61 aacaggag 68
||||||||
Sbjct: 29 aacaggag 22
>26639_cfa-mir-24-1:mirbase
Length = 62
Score = 99.6 bits (50), Expect = 2e-22
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 5 ggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcaggaaca 64
||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||
Sbjct: 1 ggtgcctactgagctgatatcagttctcattgtacacactggctcagttcagcaggaaca 60
Query: 65 gg 66
||
Sbjct: 61 gg 62
>27345_mdo-mir-24-1:mirbase
Length = 57
Score = 97.6 bits (49), Expect = 9e-22
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 5 ggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagga 61
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 1 ggtgcctactgagctgataacagttctgattttacacactggctcagttcagcagga 57
>25716_xtr-mir-24a:mirbase
Length = 67
Score = 85.7 bits (43), Expect = 3e-18
Identities = 59/63 (93%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 gtgcctactgagctgatatcagttctgattttacatactggctcagttcagcaggaacag 65
||||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
Query: 66 gag 68
|||
Sbjct: 65 gag 67
>25717_xtr-mir-24a:mirbase
Length = 67
Score = 85.7 bits (43), Expect = 3e-18
Identities = 59/63 (93%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 gtgcctactgagctgatatcagttctgattttacatactggctcagttcagcaggaacag 65
||||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
Query: 66 gag 68
|||
Sbjct: 65 gag 67
>31442_oan-mir-24:mirbase
Length = 84
Score = 71.9 bits (36), Expect = 5e-14
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
|||| |||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct: 10 ctccagtgcctactgagctgatatcagttct-cgttgacccactggctcagttcagcagg 68
Query: 61 aacaggag 68
||||||||
Sbjct: 69 aacaggag 76
>26961_eca-mir-24:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacaggag 68
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>27346_mdo-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacaggag 68
|||||||||||||||||||||||||||
Sbjct: 44 actggctcagttcagcaggaacaggag 70
>31792_mmu-mir-24-2:mirbase
Length = 107
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacaggag 68
|||||||||||||||||||||||||||
Sbjct: 59 actggctcagttcagcaggaacaggag 85
>32513_mmu-mir-3074-2:mirbase
Length = 83
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 42 actggctcagttcagcaggaacaggag 68
|||||||||||||||||||||||||||
Sbjct: 35 actggctcagttcagcaggaacaggag 9
>32514_mmu-mir-3074-2:mirbase
Length = 83
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 42 actggctcagttcagcaggaacaggag 68
|||||||||||||||||||||||||||
Sbjct: 35 actggctcagttcagcaggaacaggag 9
>32676_rno-mir-24-2:mirbase
Length = 108
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacaggag 68
|||||||||||||||||||||||||||
Sbjct: 59 actggctcagttcagcaggaacaggag 85
>34228_dre-mir-24-1:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacaggag 68
|||||||||||||||||||||||||||
Sbjct: 47 actggctcagttcagcaggaacaggag 73
>34230_dre-mir-24-3:mirbase
Length = 142
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacaggag 68
|||||||||||||||||||||||||||
Sbjct: 78 actggctcagttcagcaggaacaggag 104
>34561_fru-mir-24-1:mirbase
Length = 79
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacaggag 68
|||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacaggag 78
>34562_fru-mir-24-1:mirbase
Length = 79
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacaggag 68
|||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacaggag 78
>34709_tni-mir-24-1:mirbase
Length = 70
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacaggag 68
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 gtgcctactgagctgatat 24
|||||||||||||||||||
Sbjct: 7 gtgcctactgagctgatat 25
>27668_mml-mir-24-2:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacagga 67
||||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagga 73
>28184_mne-mir-24-2:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacagga 67
||||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagga 73
>26640_cfa-mir-24-2:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacagg 66
|||||||||||||||||||||||||
Sbjct: 38 actggctcagttcagcaggaacagg 62
>28270_ggo-mir-24:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacagg 66
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>28378_hsa-mir-24-2:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacagg 66
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>30057_ppa-mir-24-2:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacagg 66
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>30164_ptr-mir-24-2:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacagg 66
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>30769_ppy-mir-24-2:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacagg 66
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>33148_bta-mir-24-2:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacagg 66
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>33928_ssc-mir-24-1:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacagg 66
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>34229_dre-mir-24-2:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacagg 66
|||||||||||||||||||||||||
Sbjct: 49 actggctcagttcagcaggaacagg 73
>25444_pma-mir-24:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacag 65
||||||||||||||||||||||||
Sbjct: 56 actggctcagttcagcaggaacag 79
>34231_dre-mir-24-4:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 ctggctcagttcagcaggaacagg 66
||||||||||||||||||||||||
Sbjct: 55 ctggctcagttcagcaggaacagg 78
>34563_fru-mir-24-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 ctggctcagttcagcaggaacagg 66
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>34710_tni-mir-24-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 ctggctcagttcagcaggaacagg 66
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>25660_xla-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 ctggctcagttcagcagga 61
|||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62
>25718_xtr-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 ctggctcagttcagcagga 61
|||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62
