miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>26414_tgu-mir-26-1:mirbase
          Length = 72

 Score =  101 bits (51), Expect = 7e-23
 Identities = 63/67 (94%)
 Strand = Plus / Plus

                                                                      
Query: 5  cctggttcaagtaatccaggataggctgtatccattcctgctggcctattcttggttact 64
          |||||||||||||||||||||||||||||||||||||   || |||||||||||||||||
Sbjct: 6  cctggttcaagtaatccaggataggctgtatccattctaactcgcctattcttggttact 65

                 
Query: 65 tgcactg 71
          |||||||
Sbjct: 66 tgcactg 72




>26415_tgu-mir-26-2:mirbase
          Length = 72

 Score =  101 bits (51), Expect = 7e-23
 Identities = 63/67 (94%)
 Strand = Plus / Plus

                                                                      
Query: 5  cctggttcaagtaatccaggataggctgtatccattcctgctggcctattcttggttact 64
          |||||||||||||||||||||||||||||||||||||   || |||||||||||||||||
Sbjct: 6  cctggttcaagtaatccaggataggctgtatccattctaactcgcctattcttggttact 65

                 
Query: 65 tgcactg 71
          |||||||
Sbjct: 66 tgcactg 72




>27350_mdo-mir-26-3:mirbase
          Length = 70

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 4  acctggttcaagtaatccaggataggctgtatccattc 41
          ||||||||||||||||||||||||||||| | ||||||
Sbjct: 1  acctggttcaagtaatccaggataggctggacccattc 38




>34235_dre-mir-26a-3:mirbase
          Length = 137

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                       
Query: 4   acctggttcaagtaatccaggataggctgtatccattcctgctggcctattcttggttac 63
           |||||||||||||||||||||||||||| | |  | |   | |||||| |||||||||||
Sbjct: 33  acctggttcaagtaatccaggataggctttgtggactagggttggcctgttcttggttac 92

                     
Query: 64  ttgcactggg 73
           ||||||||||
Sbjct: 93  ttgcactggg 102




>25721_xtr-mir-26-1:mirbase
          Length = 85

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 5  cctggttcaagtaatccaggataggctgt 33
          |||||||||||||||||||||||||||||
Sbjct: 9  cctggttcaagtaatccaggataggctgt 37




>25446_pma-mir-26a-1:mirbase
          Length = 87

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 5  cctggttcaagtaatccaggataggctg 32
          ||||||||||||||||||||||||||||
Sbjct: 9  cctggttcaagtaatccaggataggctg 36




>34565_fru-mir-26:mirbase
          Length = 88

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 5  cctggttcaagtaatccaggataggctg 32
          ||||||||||||||||||||||||||||
Sbjct: 10 cctggttcaagtaatccaggataggctg 37




>34712_tni-mir-26:mirbase
          Length = 96

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 5  cctggttcaagtaatccaggataggctg 32
          ||||||||||||||||||||||||||||
Sbjct: 15 cctggttcaagtaatccaggataggctg 42




>34233_dre-mir-26a-1:mirbase
          Length = 78

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 5  cctggttcaagtaatccaggataggct 31
          |||||||||||||||||||||||||||
Sbjct: 6  cctggttcaagtaatccaggataggct 32




>26964_eca-mir-26a:mirbase
          Length = 84

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 10 ttcaagtaatccaggataggctgtatccat 39
          |||||||||||||||||||||||| |||||
Sbjct: 14 ttcaagtaatccaggataggctgtttccat 43




>27671_mml-mir-26a-2:mirbase
          Length = 84

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 10 ttcaagtaatccaggataggctgtatccat 39
          |||||||||||||||||||||||| |||||
Sbjct: 14 ttcaagtaatccaggataggctgtttccat 43




>28381_hsa-mir-26a-2:mirbase
          Length = 84

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 10 ttcaagtaatccaggataggctgtatccat 39
          |||||||||||||||||||||||| |||||
Sbjct: 14 ttcaagtaatccaggataggctgtttccat 43




>30167_ptr-mir-26a-2:mirbase
          Length = 83

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 10 ttcaagtaatccaggataggctgtatccat 39
          |||||||||||||||||||||||| |||||
Sbjct: 13 ttcaagtaatccaggataggctgtttccat 42




>30772_ppy-mir-26a-2:mirbase
          Length = 84

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 10 ttcaagtaatccaggataggctgtatccat 39
          |||||||||||||||||||||||| |||||
Sbjct: 14 ttcaagtaatccaggataggctgtttccat 43




>31443_oan-mir-26:mirbase
          Length = 81

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 8  ggttcaagtaatccaggataggctgt 33
          ||||||||||||||||||||||||||
Sbjct: 12 ggttcaagtaatccaggataggctgt 37




>33151_bta-mir-26a-2:mirbase
          Length = 84

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 10 ttcaagtaatccaggataggctgtatccat 39
          |||||||||||||||||||||||| |||||
Sbjct: 14 ttcaagtaatccaggataggctgtttccat 43




>33930_ssc-mir-26a:mirbase
          Length = 84

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 10 ttcaagtaatccaggataggctgtatccat 39
          |||||||||||||||||||||||| |||||
Sbjct: 14 ttcaagtaatccaggataggctgtttccat 43




>25447_pma-mir-26a-2:mirbase
          Length = 91

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  gttcaagtaatccaggataggctgt 33
          |||||||||||||||||||||||||
Sbjct: 18 gttcaagtaatccaggataggctgt 42




>25722_xtr-mir-26-2:mirbase
          Length = 80

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 10 ttcaagtaatccaggataggctgta 34
          |||||||||||||||||||||||||
Sbjct: 12 ttcaagtaatccaggataggctgta 36




>26965_eca-mir-26a-2:mirbase
          Length = 77

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  gttcaagtaatccaggataggctgt 33
          |||||||||||||||||||||||||
Sbjct: 9  gttcaagtaatccaggataggctgt 33



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 47 ggcctattcttggttacttgcac 69
          |||||||||||||||||||||||
Sbjct: 47 ggcctattcttggttacttgcac 69




>27348_mdo-mir-26-1:mirbase
          Length = 69

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 10 ttcaagtaatccaggataggctgtatcca 38
          |||||||||||||||||||||||| ||||
Sbjct: 1  ttcaagtaatccaggataggctgtgtcca 29




>27551_lla-mir-26a:mirbase
          Length = 77

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  gttcaagtaatccaggataggctgt 33
          |||||||||||||||||||||||||
Sbjct: 9  gttcaagtaatccaggataggctgt 33



 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 47 ggcctattcttggttacttgcactggga 74
          ||||||||||||||||||||||| ||||
Sbjct: 47 ggcctattcttggttacttgcacgggga 74




>27670_mml-mir-26a-1:mirbase
          Length = 77

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  gttcaagtaatccaggataggctgt 33
          |||||||||||||||||||||||||
Sbjct: 9  gttcaagtaatccaggataggctgt 33



 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 47 ggcctattcttggttacttgcactggga 74
          ||||||||||||||||||||||| ||||
Sbjct: 47 ggcctattcttggttacttgcacgggga 74




>28186_mne-mir-26a:mirbase
          Length = 77

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  gttcaagtaatccaggataggctgt 33
          |||||||||||||||||||||||||
Sbjct: 9  gttcaagtaatccaggataggctgt 33



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 47 ggcctattcttggttacttgcactggga 74
          |||||||||||| |||||||||| ||||
Sbjct: 47 ggcctattcttgattacttgcacgggga 74




>28272_ggo-mir-26a:mirbase
          Length = 77

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  gttcaagtaatccaggataggctgt 33
          |||||||||||||||||||||||||
Sbjct: 9  gttcaagtaatccaggataggctgt 33



 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 47 ggcctattcttggttacttgcactggga 74
          ||||||||||||||||||||||| ||||
Sbjct: 47 ggcctattcttggttacttgcacgggga 74




>28380_hsa-mir-26a-1:mirbase
          Length = 77

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  gttcaagtaatccaggataggctgt 33
          |||||||||||||||||||||||||
Sbjct: 9  gttcaagtaatccaggataggctgt 33



 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 47 ggcctattcttggttacttgcactggga 74
          ||||||||||||||||||||||| ||||
Sbjct: 47 ggcctattcttggttacttgcacgggga 74




>30059_ppa-mir-26a:mirbase
          Length = 77

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  gttcaagtaatccaggataggctgt 33
          |||||||||||||||||||||||||
Sbjct: 9  gttcaagtaatccaggataggctgt 33



 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 47 ggcctattcttggttacttgcactggga 74
          ||||||||||||||||||||||| ||||
Sbjct: 47 ggcctattcttggttacttgcacgggga 74




>30166_ptr-mir-26a-1:mirbase
          Length = 77

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  gttcaagtaatccaggataggctgt 33
          |||||||||||||||||||||||||
Sbjct: 9  gttcaagtaatccaggataggctgt 33



 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 47 ggcctattcttggttacttgcactggga 74
          ||||||||||||||||||||||| ||||
Sbjct: 47 ggcctattcttggttacttgcacgggga 74




>30771_ppy-mir-26a:mirbase
          Length = 77

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  gttcaagtaatccaggataggctgt 33
          |||||||||||||||||||||||||
Sbjct: 9  gttcaagtaatccaggataggctgt 33



 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 47 ggcctattcttggttacttgcactggga 74
          ||||||||||||||||||||||| ||||
Sbjct: 47 ggcctattcttggttacttgcacgggga 74




>31794_mmu-mir-26a-1:mirbase
          Length = 90

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  gttcaagtaatccaggataggctgt 33
          |||||||||||||||||||||||||
Sbjct: 15 gttcaagtaatccaggataggctgt 39



 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 47 ggcctattcttggttacttgcactggga 74
          ||||||||||||||||||||||| ||||
Sbjct: 53 ggcctattcttggttacttgcacgggga 80




>32678_rno-mir-26a:mirbase
          Length = 90

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  gttcaagtaatccaggataggctgt 33
          |||||||||||||||||||||||||
Sbjct: 15 gttcaagtaatccaggataggctgt 39



 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 47 ggcctattcttggttacttgcactggga 74
          ||||||||||||||||||||||| ||||
Sbjct: 53 ggcctattcttggttacttgcacgggga 80




>33150_bta-mir-26a-1:mirbase
          Length = 90

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  gttcaagtaatccaggataggctgt 33
          |||||||||||||||||||||||||
Sbjct: 15 gttcaagtaatccaggataggctgt 39



 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 47 ggcctattcttggttacttgcac 69
          |||||||||| ||||||||||||
Sbjct: 53 ggcctattctcggttacttgcac 75




>33153_bta-mir-26c:mirbase
          Length = 90

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                   
Query: 9  gttcaagtaatccaggataggctgt 33
          |||||||||||||||||||||||||
Sbjct: 76 gttcaagtaatccaggataggctgt 52



 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                 
Query: 47 ggcctattcttggttacttgcac 69
          |||||||||| ||||||||||||
Sbjct: 38 ggcctattctcggttacttgcac 16




>34234_dre-mir-26a-2:mirbase
          Length = 128

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  gttcaagtaatccaggataggctgt 33
          |||||||||||||||||||||||||
Sbjct: 36 gttcaagtaatccaggataggctgt 60




>34236_dre-mir-26b:mirbase
          Length = 97

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 5  cctggttcaagtaatccaggatagg 29
          |||||||||||||||||||||||||
Sbjct: 15 cctggttcaagtaatccaggatagg 39



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 47 ggcctattcttggttacttg 66
          ||||||||||||||||||||
Sbjct: 57 ggcctattcttggttacttg 76




>26642_cfa-mir-26a-1:mirbase
          Length = 61

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 10 ttcaagtaatccaggataggctgt 33
          ||||||||||||||||||||||||
Sbjct: 1  ttcaagtaatccaggataggctgt 24



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 47 ggcctattcttggttacttgcac 69
          |||||||||||||||||||||||
Sbjct: 38 ggcctattcttggttacttgcac 60




>26643_cfa-mir-26a-2:mirbase
          Length = 60

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 10 ttcaagtaatccaggataggctgt 33
          ||||||||||||||||||||||||
Sbjct: 1  ttcaagtaatccaggataggctgt 24




>27349_mdo-mir-26-2:mirbase
          Length = 68

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 10 ttcaagtaatccaggataggctgt 33
          ||||||||||||||||||||||||
Sbjct: 5  ttcaagtaatccaggataggctgt 28




>31795_mmu-mir-26a-2:mirbase
          Length = 84

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 10 ttcaagtaatccaggataggctgt 33
          ||||||||||||||||||||||||
Sbjct: 14 ttcaagtaatccaggataggctgt 37




>25448_pma-mir-26b:mirbase
          Length = 89

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 5  cctggttcaagtaatccaggatagg 29
          |||| ||||||||||||||||||||
Sbjct: 11 cctgattcaagtaatccaggatagg 35