miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26414_tgu-mir-26-1:mirbase
Length = 72
Score = 101 bits (51), Expect = 7e-23
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 5 cctggttcaagtaatccaggataggctgtatccattcctgctggcctattcttggttact 64
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 6 cctggttcaagtaatccaggataggctgtatccattctaactcgcctattcttggttact 65
Query: 65 tgcactg 71
|||||||
Sbjct: 66 tgcactg 72
>26415_tgu-mir-26-2:mirbase
Length = 72
Score = 101 bits (51), Expect = 7e-23
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 5 cctggttcaagtaatccaggataggctgtatccattcctgctggcctattcttggttact 64
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 6 cctggttcaagtaatccaggataggctgtatccattctaactcgcctattcttggttact 65
Query: 65 tgcactg 71
|||||||
Sbjct: 66 tgcactg 72
>27350_mdo-mir-26-3:mirbase
Length = 70
Score = 60.0 bits (30), Expect = 2e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 4 acctggttcaagtaatccaggataggctgtatccattc 41
||||||||||||||||||||||||||||| | ||||||
Sbjct: 1 acctggttcaagtaatccaggataggctggacccattc 38
>34235_dre-mir-26a-3:mirbase
Length = 137
Score = 60.0 bits (30), Expect = 2e-10
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 4 acctggttcaagtaatccaggataggctgtatccattcctgctggcctattcttggttac 63
|||||||||||||||||||||||||||| | | | | | |||||| |||||||||||
Sbjct: 33 acctggttcaagtaatccaggataggctttgtggactagggttggcctgttcttggttac 92
Query: 64 ttgcactggg 73
||||||||||
Sbjct: 93 ttgcactggg 102
>25721_xtr-mir-26-1:mirbase
Length = 85
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 cctggttcaagtaatccaggataggctgt 33
|||||||||||||||||||||||||||||
Sbjct: 9 cctggttcaagtaatccaggataggctgt 37
>25446_pma-mir-26a-1:mirbase
Length = 87
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 cctggttcaagtaatccaggataggctg 32
||||||||||||||||||||||||||||
Sbjct: 9 cctggttcaagtaatccaggataggctg 36
>34565_fru-mir-26:mirbase
Length = 88
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 cctggttcaagtaatccaggataggctg 32
||||||||||||||||||||||||||||
Sbjct: 10 cctggttcaagtaatccaggataggctg 37
>34712_tni-mir-26:mirbase
Length = 96
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 cctggttcaagtaatccaggataggctg 32
||||||||||||||||||||||||||||
Sbjct: 15 cctggttcaagtaatccaggataggctg 42
>34233_dre-mir-26a-1:mirbase
Length = 78
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 cctggttcaagtaatccaggataggct 31
|||||||||||||||||||||||||||
Sbjct: 6 cctggttcaagtaatccaggataggct 32
>26964_eca-mir-26a:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 10 ttcaagtaatccaggataggctgtatccat 39
|||||||||||||||||||||||| |||||
Sbjct: 14 ttcaagtaatccaggataggctgtttccat 43
>27671_mml-mir-26a-2:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 10 ttcaagtaatccaggataggctgtatccat 39
|||||||||||||||||||||||| |||||
Sbjct: 14 ttcaagtaatccaggataggctgtttccat 43
>28381_hsa-mir-26a-2:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 10 ttcaagtaatccaggataggctgtatccat 39
|||||||||||||||||||||||| |||||
Sbjct: 14 ttcaagtaatccaggataggctgtttccat 43
>30167_ptr-mir-26a-2:mirbase
Length = 83
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 10 ttcaagtaatccaggataggctgtatccat 39
|||||||||||||||||||||||| |||||
Sbjct: 13 ttcaagtaatccaggataggctgtttccat 42
>30772_ppy-mir-26a-2:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 10 ttcaagtaatccaggataggctgtatccat 39
|||||||||||||||||||||||| |||||
Sbjct: 14 ttcaagtaatccaggataggctgtttccat 43
>31443_oan-mir-26:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 ggttcaagtaatccaggataggctgt 33
||||||||||||||||||||||||||
Sbjct: 12 ggttcaagtaatccaggataggctgt 37
>33151_bta-mir-26a-2:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 10 ttcaagtaatccaggataggctgtatccat 39
|||||||||||||||||||||||| |||||
Sbjct: 14 ttcaagtaatccaggataggctgtttccat 43
>33930_ssc-mir-26a:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 10 ttcaagtaatccaggataggctgtatccat 39
|||||||||||||||||||||||| |||||
Sbjct: 14 ttcaagtaatccaggataggctgtttccat 43
>25447_pma-mir-26a-2:mirbase
Length = 91
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gttcaagtaatccaggataggctgt 33
|||||||||||||||||||||||||
Sbjct: 18 gttcaagtaatccaggataggctgt 42
>25722_xtr-mir-26-2:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 ttcaagtaatccaggataggctgta 34
|||||||||||||||||||||||||
Sbjct: 12 ttcaagtaatccaggataggctgta 36
>26965_eca-mir-26a-2:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gttcaagtaatccaggataggctgt 33
|||||||||||||||||||||||||
Sbjct: 9 gttcaagtaatccaggataggctgt 33
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 ggcctattcttggttacttgcac 69
|||||||||||||||||||||||
Sbjct: 47 ggcctattcttggttacttgcac 69
>27348_mdo-mir-26-1:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ttcaagtaatccaggataggctgtatcca 38
|||||||||||||||||||||||| ||||
Sbjct: 1 ttcaagtaatccaggataggctgtgtcca 29
>27551_lla-mir-26a:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gttcaagtaatccaggataggctgt 33
|||||||||||||||||||||||||
Sbjct: 9 gttcaagtaatccaggataggctgt 33
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 ggcctattcttggttacttgcactggga 74
||||||||||||||||||||||| ||||
Sbjct: 47 ggcctattcttggttacttgcacgggga 74
>27670_mml-mir-26a-1:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gttcaagtaatccaggataggctgt 33
|||||||||||||||||||||||||
Sbjct: 9 gttcaagtaatccaggataggctgt 33
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 ggcctattcttggttacttgcactggga 74
||||||||||||||||||||||| ||||
Sbjct: 47 ggcctattcttggttacttgcacgggga 74
>28186_mne-mir-26a:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gttcaagtaatccaggataggctgt 33
|||||||||||||||||||||||||
Sbjct: 9 gttcaagtaatccaggataggctgt 33
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 47 ggcctattcttggttacttgcactggga 74
|||||||||||| |||||||||| ||||
Sbjct: 47 ggcctattcttgattacttgcacgggga 74
>28272_ggo-mir-26a:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gttcaagtaatccaggataggctgt 33
|||||||||||||||||||||||||
Sbjct: 9 gttcaagtaatccaggataggctgt 33
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 ggcctattcttggttacttgcactggga 74
||||||||||||||||||||||| ||||
Sbjct: 47 ggcctattcttggttacttgcacgggga 74
>28380_hsa-mir-26a-1:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gttcaagtaatccaggataggctgt 33
|||||||||||||||||||||||||
Sbjct: 9 gttcaagtaatccaggataggctgt 33
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 ggcctattcttggttacttgcactggga 74
||||||||||||||||||||||| ||||
Sbjct: 47 ggcctattcttggttacttgcacgggga 74
>30059_ppa-mir-26a:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gttcaagtaatccaggataggctgt 33
|||||||||||||||||||||||||
Sbjct: 9 gttcaagtaatccaggataggctgt 33
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 ggcctattcttggttacttgcactggga 74
||||||||||||||||||||||| ||||
Sbjct: 47 ggcctattcttggttacttgcacgggga 74
>30166_ptr-mir-26a-1:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gttcaagtaatccaggataggctgt 33
|||||||||||||||||||||||||
Sbjct: 9 gttcaagtaatccaggataggctgt 33
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 ggcctattcttggttacttgcactggga 74
||||||||||||||||||||||| ||||
Sbjct: 47 ggcctattcttggttacttgcacgggga 74
>30771_ppy-mir-26a:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gttcaagtaatccaggataggctgt 33
|||||||||||||||||||||||||
Sbjct: 9 gttcaagtaatccaggataggctgt 33
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 ggcctattcttggttacttgcactggga 74
||||||||||||||||||||||| ||||
Sbjct: 47 ggcctattcttggttacttgcacgggga 74
>31794_mmu-mir-26a-1:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gttcaagtaatccaggataggctgt 33
|||||||||||||||||||||||||
Sbjct: 15 gttcaagtaatccaggataggctgt 39
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 ggcctattcttggttacttgcactggga 74
||||||||||||||||||||||| ||||
Sbjct: 53 ggcctattcttggttacttgcacgggga 80
>32678_rno-mir-26a:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gttcaagtaatccaggataggctgt 33
|||||||||||||||||||||||||
Sbjct: 15 gttcaagtaatccaggataggctgt 39
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 ggcctattcttggttacttgcactggga 74
||||||||||||||||||||||| ||||
Sbjct: 53 ggcctattcttggttacttgcacgggga 80
>33150_bta-mir-26a-1:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gttcaagtaatccaggataggctgt 33
|||||||||||||||||||||||||
Sbjct: 15 gttcaagtaatccaggataggctgt 39
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 47 ggcctattcttggttacttgcac 69
|||||||||| ||||||||||||
Sbjct: 53 ggcctattctcggttacttgcac 75
>33153_bta-mir-26c:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 9 gttcaagtaatccaggataggctgt 33
|||||||||||||||||||||||||
Sbjct: 76 gttcaagtaatccaggataggctgt 52
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 47 ggcctattcttggttacttgcac 69
|||||||||| ||||||||||||
Sbjct: 38 ggcctattctcggttacttgcac 16
>34234_dre-mir-26a-2:mirbase
Length = 128
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gttcaagtaatccaggataggctgt 33
|||||||||||||||||||||||||
Sbjct: 36 gttcaagtaatccaggataggctgt 60
>34236_dre-mir-26b:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 cctggttcaagtaatccaggatagg 29
|||||||||||||||||||||||||
Sbjct: 15 cctggttcaagtaatccaggatagg 39
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 ggcctattcttggttacttg 66
||||||||||||||||||||
Sbjct: 57 ggcctattcttggttacttg 76
>26642_cfa-mir-26a-1:mirbase
Length = 61
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ttcaagtaatccaggataggctgt 33
||||||||||||||||||||||||
Sbjct: 1 ttcaagtaatccaggataggctgt 24
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 ggcctattcttggttacttgcac 69
|||||||||||||||||||||||
Sbjct: 38 ggcctattcttggttacttgcac 60
>26643_cfa-mir-26a-2:mirbase
Length = 60
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ttcaagtaatccaggataggctgt 33
||||||||||||||||||||||||
Sbjct: 1 ttcaagtaatccaggataggctgt 24
>27349_mdo-mir-26-2:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ttcaagtaatccaggataggctgt 33
||||||||||||||||||||||||
Sbjct: 5 ttcaagtaatccaggataggctgt 28
>31795_mmu-mir-26a-2:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ttcaagtaatccaggataggctgt 33
||||||||||||||||||||||||
Sbjct: 14 ttcaagtaatccaggataggctgt 37
>25448_pma-mir-26b:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 cctggttcaagtaatccaggatagg 29
|||| ||||||||||||||||||||
Sbjct: 11 cctgattcaagtaatccaggatagg 35