miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26416_tgu-mir-27:mirbase
Length = 91
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 3 ctctctggtgaggtgcagagcttagctgattggtgaacagtgattgtttccctctttgtt 62
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3 ctctctggcgaggtgcagagcttagctgattggtgaacagtgattgttttcctctttgtt 62
Query: 63 cacagtggctaagttctgcacctgaagag 91
|||||||||||||||||||||||||||||
Sbjct: 63 cacagtggctaagttctgcacctgaagag 91
>25724_xtr-mir-27b:mirbase
Length = 96
Score = 151 bits (76), Expect = 1e-37
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattgattccctctttgttcacagtggct 72
Query: 73 aagttctgcacctgaagaga 92
||||||||||||||||||||
Sbjct: 73 aagttctgcacctgaagaga 92
>27674_mml-mir-27b:mirbase
Length = 97
Score = 145 bits (73), Expect = 7e-36
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 72
Query: 73 aagttctgcacctgaagagaaggtg 97
|||||||||||||||||||||||||
Sbjct: 73 aagttctgcacctgaagagaaggtg 97
>28384_hsa-mir-27b:mirbase
Length = 97
Score = 145 bits (73), Expect = 7e-36
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 72
Query: 73 aagttctgcacctgaagagaaggtg 97
|||||||||||||||||||||||||
Sbjct: 73 aagttctgcacctgaagagaaggtg 97
>30170_ptr-mir-27b:mirbase
Length = 96
Score = 145 bits (73), Expect = 7e-36
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 12 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 71
Query: 73 aagttctgcacctgaagagaaggtg 97
|||||||||||||||||||||||||
Sbjct: 72 aagttctgcacctgaagagaaggtg 96
>30775_ppy-mir-27b:mirbase
Length = 97
Score = 145 bits (73), Expect = 7e-36
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 72
Query: 73 aagttctgcacctgaagagaaggtg 97
|||||||||||||||||||||||||
Sbjct: 73 aagttctgcacctgaagagaaggtg 97
>32681_rno-mir-27b:mirbase
Length = 97
Score = 145 bits (73), Expect = 7e-36
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 72
Query: 73 aagttctgcacctgaagagaaggtg 97
|||||||||||||||||||||||||
Sbjct: 73 aagttctgcacctgaagagaaggtg 97
>33156_bta-mir-27b:mirbase
Length = 97
Score = 145 bits (73), Expect = 7e-36
Identities = 91/97 (93%)
Strand = Plus / Plus
Query: 1 acctctctggtgaggtgcagagcttagctgattggtgaacagtgattgtttccctctttg 60
||||||||| |||||||||||||||||||||||||||||||||| || || || |||||
Sbjct: 1 acctctctgacgaggtgcagagcttagctgattggtgaacagtgactggtttccgctttg 60
Query: 61 ttcacagtggctaagttctgcacctgaagagaaggtg 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcacagtggctaagttctgcacctgaagagaaggtg 97
>27352_mdo-mir-27b:mirbase
Length = 97
Score = 125 bits (63), Expect = 6e-30
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
|||||||||||||||| |||||||||||||| | || || ||||||||||||||||||||
Sbjct: 13 aggtgcagagcttagccgattggtgaacagtcactgatttcctctttgttcacagtggct 72
Query: 73 aagttctgcacctgaagagaagg 95
|||||||||||||||||||||||
Sbjct: 73 aagttctgcacctgaagagaagg 95
>33932_ssc-mir-27b:mirbase
Length = 80
Score = 123 bits (62), Expect = 2e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 12 gaggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggc 71
|||||||||||||||||||||||||||||||||| || || || ||||||||||||||||
Sbjct: 3 gaggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggc 62
Query: 72 taagttctgcacctgaag 89
||||||||||||||||||
Sbjct: 63 taagttctgcacctgaag 80
>31798_mmu-mir-27b:mirbase
Length = 73
Score = 121 bits (61), Expect = 1e-28
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 1 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 60
Query: 73 aagttctgcacct 85
|||||||||||||
Sbjct: 61 aagttctgcacct 73
>34566_fru-mir-27b:mirbase
Length = 74
Score = 121 bits (61), Expect = 1e-28
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 18 cagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggctaagtt 77
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
Query: 78 ctgcacctg 86
|||||||||
Sbjct: 66 ctgcacctg 74
>34713_tni-mir-27b:mirbase
Length = 74
Score = 121 bits (61), Expect = 1e-28
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 18 cagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggctaagtt 77
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
Query: 78 ctgcacctg 86
|||||||||
Sbjct: 66 ctgcacctg 74
>26967_eca-mir-27b:mirbase
Length = 73
Score = 113 bits (57), Expect = 2e-26
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
||||||||||||||||||||||||||||||||| || || || |||||||||||||||||
Sbjct: 1 aggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggct 60
Query: 73 aagttctgcacct 85
|||||||||||||
Sbjct: 61 aagttctgcacct 73
>31445_oan-mir-27b:mirbase
Length = 117
Score = 101 bits (51), Expect = 9e-23
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 17 gcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggctaagt 76
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 28 gcagagcttagctgattggtgaacagtgattgctggactctttgttcacagtggctaagt 87
Query: 77 tctgcacctgaagagaagg 95
||||| || | ||||||||
Sbjct: 88 tctgcgcccgcagagaagg 106
>34238_dre-mir-27b:mirbase
Length = 91
Score = 99.6 bits (50), Expect = 4e-22
Identities = 73/80 (91%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 12 aggtgcagagcttagctgattggtgaacagtgattg---aactctttgttcacagtggct 68
Query: 73 aagttctgcacctgaagaga 92
|||||||||| |||| ||||
Sbjct: 69 aagttctgcatctgaggaga 88
>26646_cfa-mir-27b:mirbase
Length = 63
Score = 93.7 bits (47), Expect = 2e-20
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 19 agagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggctaagttc 78
||||||||||||||||||||||||||| || || || |||||||||||||||||||||||
Sbjct: 1 agagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggctaagttc 60
Query: 79 tgc 81
|||
Sbjct: 61 tgc 63
>34240_dre-mir-27d:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 57 tttgttcacagtggctaagttctgcacctgaagagaa 93
||||||||||||||||||||||| |||| ||| ||||
Sbjct: 53 tttgttcacagtggctaagttcttcacccgaaaagaa 89
>25450_pma-mir-27b:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttctgca 82
||||||||||||||||||||||||
Sbjct: 47 tgttcacagtggctaagttctgca 70
>25449_pma-mir-27a:mirbase
Length = 75
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 ttgttcacagtggctaagttc 78
|||||||||||||||||||||
Sbjct: 47 ttgttcacagtggctaagttc 67
>34568_fru-mir-27e:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 ttgttcacagtggctaagttc 78
|||||||||||||||||||||
Sbjct: 57 ttgttcacagtggctaagttc 77
>34715_tni-mir-27e:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 ttgttcacagtggctaagttc 78
|||||||||||||||||||||
Sbjct: 57 ttgttcacagtggctaagttc 77
>25723_xtr-mir-27a:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>25725_xtr-mir-27c-1:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>25726_xtr-mir-27c-2:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>26645_cfa-mir-27a:mirbase
Length = 60
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 39 tgttcacagtggctaagttc 58
>26966_eca-mir-27a:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>27351_mdo-mir-27a:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttc 73
>27491_age-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>27599_sla-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>27673_mml-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>28187_mne-mir-27a:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>28273_ggo-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>28383_hsa-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>30060_ppa-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>30169_ptr-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>30774_ppy-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>31404_lca-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>31444_oan-mir-27a:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 51 tgttcacagtggctaagttc 70
>31797_mmu-mir-27a:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttc 73
>32680_rno-mir-27a:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttc 73
>33154_bta-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>33155_bta-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>33931_ssc-mir-27a:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>34237_dre-mir-27a:mirbase
Length = 131
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 77 tgttcacagtggctaagttc 96
>34241_dre-mir-27e:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttc 78
||||||||||||||||||||
Sbjct: 63 tgttcacagtggctaagttc 82