miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>26416_tgu-mir-27:mirbase
          Length = 91

 Score =  161 bits (81), Expect = 1e-40
 Identities = 87/89 (97%)
 Strand = Plus / Plus

                                                                      
Query: 3  ctctctggtgaggtgcagagcttagctgattggtgaacagtgattgtttccctctttgtt 62
          |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3  ctctctggcgaggtgcagagcttagctgattggtgaacagtgattgttttcctctttgtt 62

                                       
Query: 63 cacagtggctaagttctgcacctgaagag 91
          |||||||||||||||||||||||||||||
Sbjct: 63 cacagtggctaagttctgcacctgaagag 91




>25724_xtr-mir-27b:mirbase
          Length = 96

 Score =  151 bits (76), Expect = 1e-37
 Identities = 79/80 (98%)
 Strand = Plus / Plus

                                                                      
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
          |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattgattccctctttgttcacagtggct 72

                              
Query: 73 aagttctgcacctgaagaga 92
          ||||||||||||||||||||
Sbjct: 73 aagttctgcacctgaagaga 92




>27674_mml-mir-27b:mirbase
          Length = 97

 Score =  145 bits (73), Expect = 7e-36
 Identities = 82/85 (96%)
 Strand = Plus / Plus

                                                                      
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
          |||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 72

                                   
Query: 73 aagttctgcacctgaagagaaggtg 97
          |||||||||||||||||||||||||
Sbjct: 73 aagttctgcacctgaagagaaggtg 97




>28384_hsa-mir-27b:mirbase
          Length = 97

 Score =  145 bits (73), Expect = 7e-36
 Identities = 82/85 (96%)
 Strand = Plus / Plus

                                                                      
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
          |||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 72

                                   
Query: 73 aagttctgcacctgaagagaaggtg 97
          |||||||||||||||||||||||||
Sbjct: 73 aagttctgcacctgaagagaaggtg 97




>30170_ptr-mir-27b:mirbase
          Length = 96

 Score =  145 bits (73), Expect = 7e-36
 Identities = 82/85 (96%)
 Strand = Plus / Plus

                                                                      
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
          |||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 12 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 71

                                   
Query: 73 aagttctgcacctgaagagaaggtg 97
          |||||||||||||||||||||||||
Sbjct: 72 aagttctgcacctgaagagaaggtg 96




>30775_ppy-mir-27b:mirbase
          Length = 97

 Score =  145 bits (73), Expect = 7e-36
 Identities = 82/85 (96%)
 Strand = Plus / Plus

                                                                      
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
          |||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 72

                                   
Query: 73 aagttctgcacctgaagagaaggtg 97
          |||||||||||||||||||||||||
Sbjct: 73 aagttctgcacctgaagagaaggtg 97




>32681_rno-mir-27b:mirbase
          Length = 97

 Score =  145 bits (73), Expect = 7e-36
 Identities = 82/85 (96%)
 Strand = Plus / Plus

                                                                      
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
          |||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 72

                                   
Query: 73 aagttctgcacctgaagagaaggtg 97
          |||||||||||||||||||||||||
Sbjct: 73 aagttctgcacctgaagagaaggtg 97




>33156_bta-mir-27b:mirbase
          Length = 97

 Score =  145 bits (73), Expect = 7e-36
 Identities = 91/97 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  acctctctggtgaggtgcagagcttagctgattggtgaacagtgattgtttccctctttg 60
          |||||||||  |||||||||||||||||||||||||||||||||| || || || |||||
Sbjct: 1  acctctctgacgaggtgcagagcttagctgattggtgaacagtgactggtttccgctttg 60

                                               
Query: 61 ttcacagtggctaagttctgcacctgaagagaaggtg 97
          |||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcacagtggctaagttctgcacctgaagagaaggtg 97




>27352_mdo-mir-27b:mirbase
          Length = 97

 Score =  125 bits (63), Expect = 6e-30
 Identities = 78/83 (93%)
 Strand = Plus / Plus

                                                                      
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
          |||||||||||||||| |||||||||||||| | || || ||||||||||||||||||||
Sbjct: 13 aggtgcagagcttagccgattggtgaacagtcactgatttcctctttgttcacagtggct 72

                                 
Query: 73 aagttctgcacctgaagagaagg 95
          |||||||||||||||||||||||
Sbjct: 73 aagttctgcacctgaagagaagg 95




>33932_ssc-mir-27b:mirbase
          Length = 80

 Score =  123 bits (62), Expect = 2e-29
 Identities = 74/78 (94%)
 Strand = Plus / Plus

                                                                      
Query: 12 gaggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggc 71
          |||||||||||||||||||||||||||||||||| || || || ||||||||||||||||
Sbjct: 3  gaggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggc 62

                            
Query: 72 taagttctgcacctgaag 89
          ||||||||||||||||||
Sbjct: 63 taagttctgcacctgaag 80




>31798_mmu-mir-27b:mirbase
          Length = 73

 Score =  121 bits (61), Expect = 1e-28
 Identities = 70/73 (95%)
 Strand = Plus / Plus

                                                                      
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
          |||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 1  aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 60

                       
Query: 73 aagttctgcacct 85
          |||||||||||||
Sbjct: 61 aagttctgcacct 73




>34566_fru-mir-27b:mirbase
          Length = 74

 Score =  121 bits (61), Expect = 1e-28
 Identities = 67/69 (97%)
 Strand = Plus / Plus

                                                                      
Query: 18 cagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggctaagtt 77
          ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 6  cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65

                   
Query: 78 ctgcacctg 86
          |||||||||
Sbjct: 66 ctgcacctg 74




>34713_tni-mir-27b:mirbase
          Length = 74

 Score =  121 bits (61), Expect = 1e-28
 Identities = 67/69 (97%)
 Strand = Plus / Plus

                                                                      
Query: 18 cagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggctaagtt 77
          ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 6  cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65

                   
Query: 78 ctgcacctg 86
          |||||||||
Sbjct: 66 ctgcacctg 74




>26967_eca-mir-27b:mirbase
          Length = 73

 Score =  113 bits (57), Expect = 2e-26
 Identities = 69/73 (94%)
 Strand = Plus / Plus

                                                                      
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
          ||||||||||||||||||||||||||||||||| || || || |||||||||||||||||
Sbjct: 1  aggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggct 60

                       
Query: 73 aagttctgcacct 85
          |||||||||||||
Sbjct: 61 aagttctgcacct 73




>31445_oan-mir-27b:mirbase
          Length = 117

 Score =  101 bits (51), Expect = 9e-23
 Identities = 72/79 (91%)
 Strand = Plus / Plus

                                                                       
Query: 17  gcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggctaagt 76
           |||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||
Sbjct: 28  gcagagcttagctgattggtgaacagtgattgctggactctttgttcacagtggctaagt 87

                              
Query: 77  tctgcacctgaagagaagg 95
           ||||| || | ||||||||
Sbjct: 88  tctgcgcccgcagagaagg 106




>34238_dre-mir-27b:mirbase
          Length = 91

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 73/80 (91%), Gaps = 3/80 (3%)
 Strand = Plus / Plus

                                                                      
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
          ||||||||||||||||||||||||||||||||||||     |||||||||||||||||||
Sbjct: 12 aggtgcagagcttagctgattggtgaacagtgattg---aactctttgttcacagtggct 68

                              
Query: 73 aagttctgcacctgaagaga 92
          |||||||||| |||| ||||
Sbjct: 69 aagttctgcatctgaggaga 88




>26646_cfa-mir-27b:mirbase
          Length = 63

 Score = 93.7 bits (47), Expect = 2e-20
 Identities = 59/63 (93%)
 Strand = Plus / Plus

                                                                      
Query: 19 agagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggctaagttc 78
          ||||||||||||||||||||||||||| || || || |||||||||||||||||||||||
Sbjct: 1  agagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggctaagttc 60

             
Query: 79 tgc 81
          |||
Sbjct: 61 tgc 63




>34240_dre-mir-27d:mirbase
          Length = 89

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 57 tttgttcacagtggctaagttctgcacctgaagagaa 93
          ||||||||||||||||||||||| |||| ||| ||||
Sbjct: 53 tttgttcacagtggctaagttcttcacccgaaaagaa 89




>25450_pma-mir-27b:mirbase
          Length = 75

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 59 tgttcacagtggctaagttctgca 82
          ||||||||||||||||||||||||
Sbjct: 47 tgttcacagtggctaagttctgca 70




>25449_pma-mir-27a:mirbase
          Length = 75

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 58 ttgttcacagtggctaagttc 78
          |||||||||||||||||||||
Sbjct: 47 ttgttcacagtggctaagttc 67




>34568_fru-mir-27e:mirbase
          Length = 100

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 58 ttgttcacagtggctaagttc 78
          |||||||||||||||||||||
Sbjct: 57 ttgttcacagtggctaagttc 77




>34715_tni-mir-27e:mirbase
          Length = 83

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 58 ttgttcacagtggctaagttc 78
          |||||||||||||||||||||
Sbjct: 57 ttgttcacagtggctaagttc 77




>25723_xtr-mir-27a:mirbase
          Length = 76

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68




>25725_xtr-mir-27c-1:mirbase
          Length = 82

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71




>25726_xtr-mir-27c-2:mirbase
          Length = 82

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71




>26645_cfa-mir-27a:mirbase
          Length = 60

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 39 tgttcacagtggctaagttc 58




>26966_eca-mir-27a:mirbase
          Length = 77

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68




>27351_mdo-mir-27a:mirbase
          Length = 86

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttc 73




>27491_age-mir-27a:mirbase
          Length = 78

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68




>27599_sla-mir-27a:mirbase
          Length = 78

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68




>27673_mml-mir-27a:mirbase
          Length = 78

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68




>28187_mne-mir-27a:mirbase
          Length = 79

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68




>28273_ggo-mir-27a:mirbase
          Length = 78

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68




>28383_hsa-mir-27a:mirbase
          Length = 78

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68




>30060_ppa-mir-27a:mirbase
          Length = 78

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68




>30169_ptr-mir-27a:mirbase
          Length = 78

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68




>30774_ppy-mir-27a:mirbase
          Length = 78

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68




>31404_lca-mir-27a:mirbase
          Length = 78

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68




>31444_oan-mir-27a:mirbase
          Length = 85

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 51 tgttcacagtggctaagttc 70




>31797_mmu-mir-27a:mirbase
          Length = 87

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttc 73




>32680_rno-mir-27a:mirbase
          Length = 87

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttc 73




>33154_bta-mir-27a:mirbase
          Length = 78

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71




>33155_bta-mir-27a:mirbase
          Length = 78

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71




>33931_ssc-mir-27a:mirbase
          Length = 82

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71




>34237_dre-mir-27a:mirbase
          Length = 131

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 77 tgttcacagtggctaagttc 96




>34241_dre-mir-27e:mirbase
          Length = 106

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 tgttcacagtggctaagttc 78
          ||||||||||||||||||||
Sbjct: 63 tgttcacagtggctaagttc 82