miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31446_oan-mir-29a-1:mirbase
Length = 118
Score = 145 bits (73), Expect = 6e-36
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 1 acccctttagaggatgactgatttcttttggtgttcagagtcaataatattttctagcac 60
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 16 acccctctagaggatgactgatttcttttggtgttcagagtcaatatcattttctagcac 75
Query: 61 catttgaaatcggttatagtgattgggga 89
|||||||||||||||||| ||||||||||
Sbjct: 76 catttgaaatcggttataatgattgggga 104
>26417_tgu-mir-29a-1:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 15 tgactgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcggt 74
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 tgactgatttcttttggtgttcagagtcaataataatttctagcaccatttgaaatcggt 60
Query: 75 tatagtgattg 85
|||||||||||
Sbjct: 61 tatagtgattg 71
>31802_mmu-mir-29a:mirbase
Length = 88
Score = 133 bits (67), Expect = 2e-32
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 7 ttagaggatgactgatttcttttggtgttcagagtcaataatattttctagcaccatttg 66
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 6 ttagaggatgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctg 65
Query: 67 aaatcggttatagtgattgggga 89
|||||||||||| ||||||||||
Sbjct: 66 aaatcggttataatgattgggga 88
>32683_rno-mir-29a:mirbase
Length = 88
Score = 133 bits (67), Expect = 2e-32
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 7 ttagaggatgactgatttcttttggtgttcagagtcaataatattttctagcaccatttg 66
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 6 ttagaggatgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctg 65
Query: 67 aaatcggttatagtgattgggga 89
|||||||||||| ||||||||||
Sbjct: 66 aaatcggttataatgattgggga 88
>33044_rno-mir-3556a:mirbase
Length = 118
Score = 133 bits (67), Expect = 2e-32
Identities = 79/83 (95%)
Strand = Plus / Minus
Query: 7 ttagaggatgactgatttcttttggtgttcagagtcaataatattttctagcaccatttg 66
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 95 ttagaggatgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctg 36
Query: 67 aaatcggttatagtgattgggga 89
|||||||||||| ||||||||||
Sbjct: 35 aaatcggttataatgattgggga 13
>33935_ssc-mir-29a:mirbase
Length = 86
Score = 131 bits (66), Expect = 9e-32
Identities = 78/82 (95%)
Strand = Plus / Plus
Query: 7 ttagaggatgactgatttcttttggtgttcagagtcaataatattttctagcaccatttg 66
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 5 ttagaggatgactgatttcttttggtgttcagagtcaatataattttctagcaccatctg 64
Query: 67 aaatcggttatagtgattgggg 88
|||||||||||| |||||||||
Sbjct: 65 aaatcggttataatgattgggg 86
>27354_mdo-mir-29a:mirbase
Length = 64
Score = 111 bits (56), Expect = 8e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 14 atgactgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcgg 73
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatatcattttctagcaccatttgaaatcgg 60
Query: 74 ttat 77
||||
Sbjct: 61 ttat 64
>26970_eca-mir-29a:mirbase
Length = 65
Score = 105 bits (53), Expect = 5e-24
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 13 gatgactgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcg 72
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 1 gatgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcg 60
Query: 73 gttat 77
|||||
Sbjct: 61 gttat 65
>27493_age-mir-29a:mirbase
Length = 64
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 14 atgactgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcgg 73
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 74 ttat 77
||||
Sbjct: 61 ttat 64
>27553_lla-mir-29a:mirbase
Length = 64
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 14 atgactgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcgg 73
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 74 ttat 77
||||
Sbjct: 61 ttat 64
>27601_sla-mir-29a:mirbase
Length = 64
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 14 atgactgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcgg 73
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 74 ttat 77
||||
Sbjct: 61 ttat 64
>27676_mml-mir-29a:mirbase
Length = 64
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 14 atgactgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcgg 73
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 74 ttat 77
||||
Sbjct: 61 ttat 64
>28189_mne-mir-29a:mirbase
Length = 64
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 14 atgactgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcgg 73
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 74 ttat 77
||||
Sbjct: 61 ttat 64
>28275_ggo-mir-29a:mirbase
Length = 64
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 14 atgactgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcgg 73
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 74 ttat 77
||||
Sbjct: 61 ttat 64
>28387_hsa-mir-29a:mirbase
Length = 64
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 14 atgactgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcgg 73
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 74 ttat 77
||||
Sbjct: 61 ttat 64
>30062_ppa-mir-29a:mirbase
Length = 64
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 14 atgactgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcgg 73
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 74 ttat 77
||||
Sbjct: 61 ttat 64
>30172_ptr-mir-29a:mirbase
Length = 64
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 14 atgactgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcgg 73
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 74 ttat 77
||||
Sbjct: 61 ttat 64
>30777_ppy-mir-29a:mirbase
Length = 64
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 14 atgactgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcgg 73
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 74 ttat 77
||||
Sbjct: 61 ttat 64
>33158_bta-mir-29a:mirbase
Length = 64
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 14 atgactgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcgg 73
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 74 ttat 77
||||
Sbjct: 61 ttat 64
>26648_cfa-mir-29a:mirbase
Length = 60
Score = 95.6 bits (48), Expect = 5e-21
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 17 actgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcggtta 76
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 1 actgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcggtta 60
>25727_xtr-mir-29a:mirbase
Length = 87
Score = 87.7 bits (44), Expect = 1e-18
Identities = 74/83 (89%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 1 acccctttagaggatgactgatttcttttggtgttcagagtcaataatattttctagcac 60
|||| |||| ||||||||||||||||| |||||||||||||| | | |||||||||||
Sbjct: 1 acccttttaaaggatgactgatttcttctggtgttcagagtc--ttttgttttctagcac 58
Query: 61 catttgaaatcggttatagtgat 83
|||||||||||||||||| ||||
Sbjct: 59 catttgaaatcggttataatgat 81
>34569_fru-mir-29a-1:mirbase
Length = 71
Score = 71.9 bits (36), Expect = 7e-14
Identities = 62/68 (91%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 15 tgactgatttcttttggtgttcagagt-caataatattttctagcaccatttgaaatcgg 73
||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||
Sbjct: 5 tgactgatttcttttggtgttcagagtccaattct-gtttctagcaccatttgaaatcgg 63
Query: 74 ttatagtg 81
||| ||||
Sbjct: 64 ttacagtg 71
>34716_tni-mir-29a-1:mirbase
Length = 72
Score = 65.9 bits (33), Expect = 4e-12
Identities = 62/69 (89%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 15 tgactgatttcttttggtgttcagagtcaataatat-tttctagcaccatttgaaatcgg 73
|||| ||||||||||||||||||||||| | | | | |||||||||||||||||||||||
Sbjct: 5 tgaccgatttcttttggtgttcagagtcca-attctgtttctagcaccatttgaaatcgg 63
Query: 74 ttatagtga 82
||| |||||
Sbjct: 64 ttacagtga 72
>34243_dre-mir-29a-2:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 3e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 15 tgactgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcggt 74
|||| ||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 5 tgaccgatttcttttggtgttcagagtcttttggggtttctagcaccatttgaaatcggt 64
Query: 75 ta 76
||
Sbjct: 65 ta 66
>34242_dre-mir-29a-1:mirbase
Length = 126
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcggttatagtgattgggga 89
|||||||||||||||||||||||||| ||| ||||||
Sbjct: 79 tctagcaccatttgaaatcggttataatgactgggga 115
>26418_tgu-mir-29a-2:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 2e-08
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 15 tgactgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcggt 74
|||| ||||||| ||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 1 tgaccgatttctcttggtgttcagagtctcagtttttgtctagcaccatttgaaatcggt 60
Query: 75 tat 77
|||
Sbjct: 61 tat 63
>31447_oan-mir-29a-2:mirbase
Length = 113
Score = 54.0 bits (27), Expect = 2e-08
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 15 tgactgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcggt 74
|||| ||||||| ||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 24 tgaccgatttctcttggtgttcagagtctcagttcttgtctagcaccatttgaaatcggt 83
Query: 75 tat 77
|||
Sbjct: 84 tat 86
>34570_fru-mir-29a-2:mirbase
Length = 126
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 ttctagcaccatttgaaatcggttata 78
|||||||||||||||||||||||||||
Sbjct: 81 ttctagcaccatttgaaatcggttata 107
>34717_tni-mir-29a-2:mirbase
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 ttctagcaccatttgaaatcggttata 78
|||||||||||||||||||||||||||
Sbjct: 57 ttctagcaccatttgaaatcggttata 83
>25729_xtr-mir-29c:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcggttata 78
||||||||||||||||||||||||||
Sbjct: 54 tctagcaccatttgaaatcggttata 79
>25914_gga-mir-29c:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcggttat 77
|||||||||||||||||||||||||
Sbjct: 53 tctagcaccatttgaaatcggttat 77
>26973_eca-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcggttat 77
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>26974_eca-mir-29c-2:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcggttat 77
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>27679_mml-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcggttat 77
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>28390_hsa-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcggttat 77
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>30175_ptr-mir-29c:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcggttat 77
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>30780_ppy-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcggttat 77
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>31805_mmu-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcggttat 77
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>32686_rno-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcggttat 77
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>33045_rno-mir-3556b:mirbase
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 53 tctagcaccatttgaaatcggttat 77
|||||||||||||||||||||||||
Sbjct: 48 tctagcaccatttgaaatcggttat 24
>33161_bta-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcggttat 77
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>33937_ssc-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcggttat 77
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>26652_cfa-mir-29c-2:mirbase
Length = 58
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcggtta 76
||||||||||||||||||||||||
Sbjct: 35 tctagcaccatttgaaatcggtta 58
>26651_cfa-mir-29c-1:mirbase
Length = 58
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcggtta 76
||||||||||||||||||||||||
Sbjct: 35 tctagcaccatttgaaatcggtta 58
>25451_pma-mir-29a:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 13 gatgactgatttcttttggtgttcagagt 41
|||||||||||||| |||||||| |||||
Sbjct: 6 gatgactgatttctcttggtgtttagagt 34
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcggttat 77
||||||||||||||||||| |||||
Sbjct: 48 tctagcaccatttgaaatcagttat 72
>25452_pma-mir-29b:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcggttat 77
|||||||||||| ||||||||||||
Sbjct: 48 tctagcaccattagaaatcggttat 72
>33162_bta-mir-29d:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcggttat 77
|||||||||||||||||||| ||||
Sbjct: 52 tctagcaccatttgaaatcgattat 76
>25453_pma-mir-29c:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 ttctagcaccatttgaaatc 71
||||||||||||||||||||
Sbjct: 52 ttctagcaccatttgaaatc 71