miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>33167_bta-mir-30c:mirbase
          Length = 105

 Score =  123 bits (62), Expect = 2e-29
 Identities = 71/74 (95%)
 Strand = Plus / Plus

                                                                      
Query: 16 gtgtaaacatcctacactctcagctgtgaactcgaggtggctgggagaggattgtttacg 75
          ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| 
Sbjct: 25 gtgtaaacatcctacactctcagctgtgagctcgaggtggctgggagagggttgtttact 84

                        
Query: 76 ccttctgccatgga 89
          ||||||||||||||
Sbjct: 85 ccttctgccatgga 98




>26976_eca-mir-30c:mirbase
          Length = 89

 Score =  121 bits (61), Expect = 9e-29
 Identities = 82/89 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  accatgctgtagcacgtgtaaacatcctacactctcagctgtgaactcgaggtggctggg 60
          ||||||||||||   ||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 1  accatgctgtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctggg 60

                                       
Query: 61 agaggattgtttacgccttctgccatgga 89
          ||||| |||||||| ||||||||||||||
Sbjct: 61 agagggttgtttactccttctgccatgga 89




>27683_mml-mir-30c-1:mirbase
          Length = 89

 Score =  121 bits (61), Expect = 9e-29
 Identities = 82/89 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  accatgctgtagcacgtgtaaacatcctacactctcagctgtgaactcgaggtggctggg 60
          ||||||||||||   ||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 1  accatgctgtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctggg 60

                                       
Query: 61 agaggattgtttacgccttctgccatgga 89
          ||||| |||||||| ||||||||||||||
Sbjct: 61 agagggttgtttactccttctgccatgga 89




>28393_hsa-mir-30c-1:mirbase
          Length = 89

 Score =  121 bits (61), Expect = 9e-29
 Identities = 82/89 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  accatgctgtagcacgtgtaaacatcctacactctcagctgtgaactcgaggtggctggg 60
          ||||||||||||   ||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 1  accatgctgtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctggg 60

                                       
Query: 61 agaggattgtttacgccttctgccatgga 89
          ||||| |||||||| ||||||||||||||
Sbjct: 61 agagggttgtttactccttctgccatgga 89




>30784_ppy-mir-30c-1:mirbase
          Length = 89

 Score =  121 bits (61), Expect = 9e-29
 Identities = 82/89 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  accatgctgtagcacgtgtaaacatcctacactctcagctgtgaactcgaggtggctggg 60
          ||||||||||||   ||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 1  accatgctgtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctggg 60

                                       
Query: 61 agaggattgtttacgccttctgccatgga 89
          ||||| |||||||| ||||||||||||||
Sbjct: 61 agagggttgtttactccttctgccatgga 89




>33942_ssc-mir-30c-1:mirbase
          Length = 80

 Score =  121 bits (61), Expect = 9e-29
 Identities = 70/73 (95%)
 Strand = Plus / Plus

                                                                      
Query: 15 cgtgtaaacatcctacactctcagctgtgaactcgaggtggctgggagaggattgtttac 74
          |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 8  cgtgtaaacatcctacactctcagctgtgagctcgaggtggctgggagagggttgtttac 67

                       
Query: 75 gccttctgccatg 87
           ||||||||||||
Sbjct: 68 tccttctgccatg 80




>30179_ptr-mir-30c-1:mirbase
          Length = 88

 Score =  119 bits (60), Expect = 3e-28
 Identities = 81/88 (92%)
 Strand = Plus / Plus

                                                                      
Query: 2  ccatgctgtagcacgtgtaaacatcctacactctcagctgtgaactcgaggtggctggga 61
          |||||||||||   ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 1  ccatgctgtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctggga 60

                                      
Query: 62 gaggattgtttacgccttctgccatgga 89
          |||| |||||||| ||||||||||||||
Sbjct: 61 gagggttgtttactccttctgccatgga 88




>31808_mmu-mir-30c-1:mirbase
          Length = 89

 Score =  115 bits (58), Expect = 5e-27
 Identities = 70/74 (94%)
 Strand = Plus / Plus

                                                                      
Query: 16 gtgtaaacatcctacactctcagctgtgaactcgaggtggctgggagaggattgtttacg 75
          ||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| 
Sbjct: 16 gtgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttact 75

                        
Query: 76 ccttctgccatgga 89
          ||||||||||||||
Sbjct: 76 ccttctgccatgga 89




>32690_rno-mir-30c-1:mirbase
          Length = 89

 Score =  115 bits (58), Expect = 5e-27
 Identities = 70/74 (94%)
 Strand = Plus / Plus

                                                                      
Query: 16 gtgtaaacatcctacactctcagctgtgaactcgaggtggctgggagaggattgtttacg 75
          ||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| 
Sbjct: 16 gtgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttact 75

                        
Query: 76 ccttctgccatgga 89
          ||||||||||||||
Sbjct: 76 ccttctgccatgga 89




>26655_cfa-mir-30c-1:mirbase
          Length = 61

 Score = 91.7 bits (46), Expect = 8e-20
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                    
Query: 17 tgtaaacatcctacactctcagctgtgaactcgaggtggctgggagaggattgtttac 74
          |||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||
Sbjct: 1  tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttac 58




>25734_xtr-mir-30c-1:mirbase
          Length = 89

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 64/73 (87%)
 Strand = Plus / Plus

                                                                      
Query: 17 tgtaaacatcctacactctcagctgtgaactcgaggtggctgggagaggattgtttacgc 76
          ||||||||||||||||||||||||||||||   |||||||||||||| |  ||||||| |
Sbjct: 17 tgtaaacatcctacactctcagctgtgaacataaggtggctgggagaagggtgtttactc 76

                       
Query: 77 cttctgccatgga 89
          |  ||||||||||
Sbjct: 77 cccctgccatgga 89




>31809_mmu-mir-30c-2:mirbase
          Length = 84

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 17 tgtaaacatcctacactctcagctgtgaa 45
          |||||||||||||||||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctgtgaa 42




>32691_rno-mir-30c-2:mirbase
          Length = 84

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 17 tgtaaacatcctacactctcagctgtgaa 45
          |||||||||||||||||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctgtgaa 42




>25735_xtr-mir-30c-2:mirbase
          Length = 78

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 17 tgtaaacatcctacactctcagctgtg 43
          |||||||||||||||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctgtg 40




>25919_gga-mir-30c-2:mirbase
          Length = 72

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 17 tgtaaacatcctacactctcagctgtg 43
          |||||||||||||||||||||||||||
Sbjct: 7  tgtaaacatcctacactctcagctgtg 33




>26425_tgu-mir-30c:mirbase
          Length = 72

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 17 tgtaaacatcctacactctcagctgtg 43
          |||||||||||||||||||||||||||
Sbjct: 1  tgtaaacatcctacactctcagctgtg 27




>26426_tgu-mir-30c:mirbase
          Length = 72

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 17 tgtaaacatcctacactctcagctgtg 43
          |||||||||||||||||||||||||||
Sbjct: 1  tgtaaacatcctacactctcagctgtg 27




>26656_cfa-mir-30c-2:mirbase
          Length = 62

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 17 tgtaaacatcctacactctcagctgtg 43
          |||||||||||||||||||||||||||
Sbjct: 1  tgtaaacatcctacactctcagctgtg 27




>26977_eca-mir-30c-2:mirbase
          Length = 60

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 17 tgtaaacatcctacactctcagctgtg 43
          |||||||||||||||||||||||||||
Sbjct: 1  tgtaaacatcctacactctcagctgtg 27




>27556_lla-mir-30c:mirbase
          Length = 72

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 17 tgtaaacatcctacactctcagctgtg 43
          |||||||||||||||||||||||||||
Sbjct: 7  tgtaaacatcctacactctcagctgtg 33




>27684_mml-mir-30c-2:mirbase
          Length = 72

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 17 tgtaaacatcctacactctcagctgtg 43
          |||||||||||||||||||||||||||
Sbjct: 7  tgtaaacatcctacactctcagctgtg 33




>28192_mne-mir-30c:mirbase
          Length = 72

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 17 tgtaaacatcctacactctcagctgtg 43
          |||||||||||||||||||||||||||
Sbjct: 7  tgtaaacatcctacactctcagctgtg 33




>28394_hsa-mir-30c-2:mirbase
          Length = 72

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 17 tgtaaacatcctacactctcagctgtg 43
          |||||||||||||||||||||||||||
Sbjct: 7  tgtaaacatcctacactctcagctgtg 33




>30180_ptr-mir-30c-2:mirbase
          Length = 72

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 17 tgtaaacatcctacactctcagctgtg 43
          |||||||||||||||||||||||||||
Sbjct: 7  tgtaaacatcctacactctcagctgtg 33




>33943_ssc-mir-30c-2:mirbase
          Length = 80

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 17 tgtaaacatcctacactctcagctgtg 43
          |||||||||||||||||||||||||||
Sbjct: 10 tgtaaacatcctacactctcagctgtg 36




>31452_oan-mir-30c:mirbase
          Length = 122

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 17 tgtaaacatcctacactctcagctgt 42
          ||||||||||||||||||||||||||
Sbjct: 31 tgtaaacatcctacactctcagctgt 56




>34249_dre-mir-30c:mirbase
          Length = 79

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 16 gtgtaaacatcctacactctcagctg 41
          ||||||||||||||||||||||||||
Sbjct: 10 gtgtaaacatcctacactctcagctg 35




>25462_pma-mir-30g:mirbase
          Length = 83

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 16 gtgtaaacatcctacactctcagctgtga 44
          ||||||||||||| |||||||||||||||
Sbjct: 11 gtgtaaacatccttcactctcagctgtga 39




>25460_pma-mir-30f-1:mirbase
          Length = 78

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 17 tgtaaacatcctacactctcagctgtg 43
          |||||||| ||||||||||||||||||
Sbjct: 10 tgtaaacaccctacactctcagctgtg 36




>33170_bta-mir-30f:mirbase
          Length = 84

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 17 tgtaaacatcctacactctcagctgtg 43
          |||||||| ||||||||||||||||||
Sbjct: 14 tgtaaacaccctacactctcagctgtg 40




>25461_pma-mir-30f-2:mirbase
          Length = 81

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 gtgtaaacatcctacactctcagctg 41
          ||||||||| ||||||||||||||||
Sbjct: 10 gtgtaaacaccctacactctcagctg 35




>34574_fru-mir-30c:mirbase
          Length = 78

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 16 gtgtaaacatcctacactctc 36
          |||||||||||||||||||||
Sbjct: 8  gtgtaaacatcctacactctc 28




>34721_tni-mir-30c:mirbase
          Length = 79

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 16 gtgtaaacatcctacactctc 36
          |||||||||||||||||||||
Sbjct: 9  gtgtaaacatcctacactctc 29




>33940_ssc-mir-30b:mirbase
          Length = 76

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 15 cgtgtaaacatcctacactc 34
          ||||||||||||||||||||
Sbjct: 9  cgtgtaaacatcctacactc 28




>33941_ssc-mir-30b:mirbase
          Length = 76

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 15 cgtgtaaacatcctacactc 34
          ||||||||||||||||||||
Sbjct: 9  cgtgtaaacatcctacactc 28