miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26434_tgu-mir-34c-1:mirbase
Length = 77
Score = 81.8 bits (41), Expect = 7e-17
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 4 cttggtttgcaggcagtgtagttagctgattgtacccagcgccccacaatcactaaattc 63
||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct: 1 cttggtttgcaggcagtgtagttagctgattgtctgcagaattccacaatcactaacttc 60
Query: 64 actgccatcaaaacaag 80
||||||| |||||||||
Sbjct: 61 actgccaccaaaacaag 77
>26435_tgu-mir-34c-2:mirbase
Length = 77
Score = 81.8 bits (41), Expect = 7e-17
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 4 cttggtttgcaggcagtgtagttagctgattgtacccagcgccccacaatcactaaattc 63
||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct: 1 cttggtttgcaggcagtgtagttagctgattgtctgcagaattccacaatcactaacttc 60
Query: 64 actgccatcaaaacaag 80
||||||| |||||||||
Sbjct: 61 actgccaccaaaacaag 77
>26664_cfa-mir-34b:mirbase
Length = 84
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 1 gtgcttggtttgcaggcagtgtagttagctgattgtacccagcgccccacaatcactaaa 60
||||| |||||| |||||||||| |||||||||||| | | || | |||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtaattagctgattgtcctctgctgcttacaatcactaac 60
Query: 61 ttcactgccatcaaaacaaggcac 84
| ||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>26985_eca-mir-34b:mirbase
Length = 84
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 1 gtgcttggtttgcaggcagtgtagttagctgattgtacccagcgccccacaatcactaaa 60
||||| |||||| |||||||||| |||||||||||||| | | | |||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtaattagctgattgtactctggagcttacaatcactaac 60
Query: 61 ttcactgccatcaaaacaaggcac 84
| ||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>26986_eca-mir-34b:mirbase
Length = 84
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 1 gtgcttggtttgcaggcagtgtagttagctgattgtacccagcgccccacaatcactaaa 60
||||| |||||| |||||||||| |||||||||||||| | | | |||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtaattagctgattgtactctggagcttacaatcactaac 60
Query: 61 ttcactgccatcaaaacaaggcac 84
| ||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>27692_mml-mir-34b:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 49 acaatcactaaattcactgccatcaaaacaaggcac 84
||||||||||| | ||||||||||||||||||||||
Sbjct: 49 acaatcactaactccactgccatcaaaacaaggcac 84
>28402_hsa-mir-34b:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 49 acaatcactaaattcactgccatcaaaacaaggcac 84
||||||||||| | ||||||||||||||||||||||
Sbjct: 49 acaatcactaactccactgccatcaaaacaaggcac 84
>30188_ptr-mir-34b:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 49 acaatcactaaattcactgccatcaaaacaaggcac 84
||||||||||| | ||||||||||||||||||||||
Sbjct: 48 acaatcactaactccactgccatcaaaacaaggcac 83
>30792_ppy-mir-34b:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 49 acaatcactaaattcactgccatcaaaacaaggcac 84
||||||||||| | ||||||||||||||||||||||
Sbjct: 49 acaatcactaactccactgccatcaaaacaaggcac 84
>31816_mmu-mir-34b:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 49 acaatcactaaattcactgccatcaaaacaaggcac 84
||||||||||| | ||||||||||||||||||||||
Sbjct: 49 acaatcactaactccactgccatcaaaacaaggcac 84
>31817_mmu-mir-34b:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 49 acaatcactaaattcactgccatcaaaacaaggcac 84
||||||||||| | ||||||||||||||||||||||
Sbjct: 49 acaatcactaactccactgccatcaaaacaaggcac 84
>32698_rno-mir-34b:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 49 acaatcactaaattcactgccatcaaaacaaggcac 84
||||||||||| | ||||||||||||||||||||||
Sbjct: 49 acaatcactaactccactgccatcaaaacaaggcac 84
>33176_bta-mir-34b:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 1 gtgcttggtttgcaggcagtgtagttagctgattgtacccagcgccccacaatcactaaa 60
||||| |||||| |||||||||| |||||||||||||| | | ||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtaattagctgattgtactctcatgcttacaatcactagt 60
Query: 61 ttcactgccatcaaaacaaggcac 84
| ||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>25743_xtr-mir-34b-1:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 ggtttgcaggcagtgtagttagctgattgt 36
||||| ||||||||||||||||||||||||
Sbjct: 6 ggttttcaggcagtgtagttagctgattgt 35
>25745_xtr-mir-34b-3:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 ggtttgcaggcagtgtagttagctgattgt 36
||||| ||||||||||||||||||||||||
Sbjct: 6 ggttttcaggcagtgtagttagctgattgt 35
>25744_xtr-mir-34b-2:mirbase
Length = 67
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 caggcagtgtagttagctgattgt 36
||||||||||||||||||||||||
Sbjct: 3 caggcagtgtagttagctgattgt 26
>25746_xtr-mir-34b-4:mirbase
Length = 67
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 caggcagtgtagttagctgattgt 36
||||||||||||||||||||||||
Sbjct: 3 caggcagtgtagttagctgattgt 26
>25927_gga-mir-34c:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 caggcagtgtagttagctgattg 35
|||||||||||||||||||||||
Sbjct: 12 caggcagtgtagttagctgattg 34
>26433_tgu-mir-34b:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 caggcagtgtagttagctgattg 35
|||||||||||||||||||||||
Sbjct: 40 caggcagtgtagttagctgattg 62
>27693_mml-mir-34c:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 caggcagtgtagttagctgattg 35
|||||||||||||||||||||||
Sbjct: 12 caggcagtgtagttagctgattg 34
>27694_mml-mir-34c:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 caggcagtgtagttagctgattg 35
|||||||||||||||||||||||
Sbjct: 12 caggcagtgtagttagctgattg 34
>26665_cfa-mir-34c:mirbase
Length = 55
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aggcagtgtagttagctgattg 35
||||||||||||||||||||||
Sbjct: 1 aggcagtgtagttagctgattg 22
>26987_eca-mir-34c:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aggcagtgtagttagctgattg 35
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>28403_hsa-mir-34c:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aggcagtgtagttagctgattg 35
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>28404_hsa-mir-34c:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aggcagtgtagttagctgattg 35
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>30189_ptr-mir-34c:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aggcagtgtagttagctgattg 35
||||||||||||||||||||||
Sbjct: 12 aggcagtgtagttagctgattg 33
>30793_ppy-mir-34c:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aggcagtgtagttagctgattg 35
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>30794_ppy-mir-34c:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aggcagtgtagttagctgattg 35
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>31462_oan-mir-34:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aggcagtgtagttagctgattg 35
||||||||||||||||||||||
Sbjct: 21 aggcagtgtagttagctgattg 42
>31818_mmu-mir-34c:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aggcagtgtagttagctgattg 35
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>32699_rno-mir-34c:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aggcagtgtagttagctgattg 35
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>33177_bta-mir-34c:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aggcagtgtagttagctgattg 35
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>33949_ssc-mir-34c:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aggcagtgtagttagctgattg 35
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>34254_dre-mir-34b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 5 ttggtttgcaggcagtgtagttagctgattgt 36
||||| || ||||||||| |||||||||||||
Sbjct: 5 ttggtctgtaggcagtgttgttagctgattgt 36
