miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31818_mmu-mir-34c:mirbase
Length = 77
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
||||| ||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct: 7 gttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacagccag 66
Query: 67 gtaaaaag 74
||||||||
Sbjct: 67 gtaaaaag 74
>32699_rno-mir-34c:mirbase
Length = 77
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
||||| ||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct: 7 gttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacagccag 66
Query: 67 gtaaaaag 74
||||||||
Sbjct: 67 gtaaaaag 74
>27693_mml-mir-34c:mirbase
Length = 77
Score = 87.7 bits (44), Expect = 1e-18
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
||||||||||||||||||||||||||||| || |||||||||||||||||| |||||
Sbjct: 7 gttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacacggccag 66
Query: 67 gtaaaaag 74
||||||||
Sbjct: 67 gtaaaaag 74
>27694_mml-mir-34c:mirbase
Length = 77
Score = 87.7 bits (44), Expect = 1e-18
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
||||||||||||||||||||||||||||| || |||||||||||||||||| |||||
Sbjct: 7 gttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacacggccag 66
Query: 67 gtaaaaag 74
||||||||
Sbjct: 67 gtaaaaag 74
>28403_hsa-mir-34c:mirbase
Length = 77
Score = 87.7 bits (44), Expect = 1e-18
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
||||| ||||||||||||||||||||||| | || |||||||||||||||||| |||||
Sbjct: 7 gttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccag 66
Query: 67 gtaaaaag 74
||||||||
Sbjct: 67 gtaaaaag 74
>28404_hsa-mir-34c:mirbase
Length = 77
Score = 87.7 bits (44), Expect = 1e-18
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
||||| ||||||||||||||||||||||| | || |||||||||||||||||| |||||
Sbjct: 7 gttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccag 66
Query: 67 gtaaaaag 74
||||||||
Sbjct: 67 gtaaaaag 74
>30189_ptr-mir-34c:mirbase
Length = 76
Score = 87.7 bits (44), Expect = 1e-18
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
||||| ||||||||||||||||||||||| | || |||||||||||||||||| |||||
Sbjct: 6 gttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccag 65
Query: 67 gtaaaaag 74
||||||||
Sbjct: 66 gtaaaaag 73
>30793_ppy-mir-34c:mirbase
Length = 77
Score = 87.7 bits (44), Expect = 1e-18
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
||||| ||||||||||||||||||||||| | || |||||||||||||||||| |||||
Sbjct: 7 gttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccag 66
Query: 67 gtaaaaag 74
||||||||
Sbjct: 67 gtaaaaag 74
>30794_ppy-mir-34c:mirbase
Length = 77
Score = 87.7 bits (44), Expect = 1e-18
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
||||| ||||||||||||||||||||||| | || |||||||||||||||||| |||||
Sbjct: 7 gttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccag 66
Query: 67 gtaaaaag 74
||||||||
Sbjct: 67 gtaaaaag 74
>26987_eca-mir-34c:mirbase
Length = 77
Score = 79.8 bits (40), Expect = 2e-16
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
||||| ||||||||||||||||||||||| | | |||||||||||||||||| |||||
Sbjct: 7 gttactaggcagtgtagttagctgattgctaataataccaatcactaaccacacggccag 66
Query: 67 gtaaaaag 74
||||||||
Sbjct: 67 gtaaaaag 74
>31462_oan-mir-34:mirbase
Length = 90
Score = 79.8 bits (40), Expect = 2e-16
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
||||| ||||||||||||||||||||||| | | ||||||||||| ||||||||||||
Sbjct: 15 gttactaggcagtgtagttagctgattgctattaacaccaatcactagccacacagccag 74
Query: 67 gtaaaaag 74
||||||||
Sbjct: 75 gtaaaaag 82
>33177_bta-mir-34c:mirbase
Length = 77
Score = 79.8 bits (40), Expect = 2e-16
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
||||| ||||||||||||||||||||||| | | |||||||||||||||||| |||||
Sbjct: 7 gttactaggcagtgtagttagctgattgctaataataccaatcactaaccacacggccag 66
Query: 67 gtaaaaag 74
||||||||
Sbjct: 67 gtaaaaag 74
>33949_ssc-mir-34c:mirbase
Length = 80
Score = 71.9 bits (36), Expect = 6e-14
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
||||| ||||||||||||||||||||||| | |||||||||||||||||| |||||
Sbjct: 7 gttactaggcagtgtagttagctgattgctgataaaaccaatcactaaccacacggccag 66
Query: 67 gtaaaaag 74
||||||||
Sbjct: 67 gtaaaaag 74
>26665_cfa-mir-34c:mirbase
Length = 55
Score = 69.9 bits (35), Expect = 2e-13
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccagg 67
||||||||||||||||||||||| | || |||||||||||||||||| ||||||
Sbjct: 1 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
>26433_tgu-mir-34b:mirbase
Length = 73
Score = 63.9 bits (32), Expect = 1e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 agcctggttaccaggcagtgtagttagctgattgcc 36
||||||||| ||||||||||||||||||||||||||
Sbjct: 29 agcctggttgccaggcagtgtagttagctgattgcc 64
>25743_xtr-mir-34b-1:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 caggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 12 caggcagtgtagttagctgattg 34
>25744_xtr-mir-34b-2:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 caggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 3 caggcagtgtagttagctgattg 25
>25745_xtr-mir-34b-3:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 caggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 12 caggcagtgtagttagctgattg 34
>25746_xtr-mir-34b-4:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 caggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 3 caggcagtgtagttagctgattg 25
>25926_gga-mir-34b:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 caggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 13 caggcagtgtagttagctgattg 35
>26434_tgu-mir-34c-1:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 caggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 10 caggcagtgtagttagctgattg 32
>26435_tgu-mir-34c-2:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 caggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 10 caggcagtgtagttagctgattg 32
