miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26447_tgu-mir-106:mirbase
Length = 73
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 6 agttgtgcaaaagtgcttacagtgcaggtagagctcagcacctactgcagtataagcact 65
||||||||||||||||||||||||||||||||| |||| | |||||||||| ||||||||
Sbjct: 3 agttgtgcaaaagtgcttacagtgcaggtagagttcaggatctactgcagtttaagcact 62
Query: 66 tctggcat 73
||||||||
Sbjct: 63 tctggcat 70
>31476_oan-mir-106:mirbase
Length = 114
Score = 69.9 bits (35), Expect = 3e-13
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 7 gttgtgcaaaagtgcttacagtgcaggtagagctcagcacctactgcagtataagcactt 66
|||||||||||||||||||||||||||||| | || |||||||||| | |||||||||
Sbjct: 23 gttgtgcaaaagtgcttacagtgcaggtagcttttagtacctactgcaatgtaagcactt 82
Query: 67 ctggcat 73
|| ||||
Sbjct: 83 ctagcat 89
>25760_xtr-mir-106:mirbase
Length = 63
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tgcaaaagtgcttacagtgcaggtaga 37
|||||||||||||| ||||||||||||
Sbjct: 1 tgcaaaagtgcttatagtgcaggtaga 27
>27504_age-mir-106a:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aaaagtgcttacagtgcaggtag 36
|||||||||||||||||||||||
Sbjct: 13 aaaagtgcttacagtgcaggtag 35
>27613_sla-mir-106a:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aaaagtgcttacagtgcaggtag 36
|||||||||||||||||||||||
Sbjct: 13 aaaagtgcttacagtgcaggtag 35
>27711_mml-mir-106a:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aaaagtgcttacagtgcaggtag 36
|||||||||||||||||||||||
Sbjct: 13 aaaagtgcttacagtgcaggtag 35
>28205_mne-mir-106a:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aaaagtgcttacagtgcaggtag 36
|||||||||||||||||||||||
Sbjct: 13 aaaagtgcttacagtgcaggtag 35
>28297_ggo-mir-106a:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aaaagtgcttacagtgcaggtag 36
|||||||||||||||||||||||
Sbjct: 13 aaaagtgcttacagtgcaggtag 35
>28423_hsa-mir-106a:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aaaagtgcttacagtgcaggtag 36
|||||||||||||||||||||||
Sbjct: 13 aaaagtgcttacagtgcaggtag 35
>30084_ppa-mir-106a:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aaaagtgcttacagtgcaggtag 36
|||||||||||||||||||||||
Sbjct: 13 aaaagtgcttacagtgcaggtag 35
>30204_ptr-mir-106a:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aaaagtgcttacagtgcaggtag 36
|||||||||||||||||||||||
Sbjct: 13 aaaagtgcttacagtgcaggtag 35
>30811_ppy-mir-106a:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aaaagtgcttacagtgcaggtag 36
|||||||||||||||||||||||
Sbjct: 13 aaaagtgcttacagtgcaggtag 35
>33194_bta-mir-106:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aaaagtgcttacagtgcaggtag 36
|||||||||||||||||||||||
Sbjct: 13 aaaagtgcttacagtgcaggtag 35
>33965_ssc-mir-106a:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aaaagtgcttacagtgcaggtag 36
|||||||||||||||||||||||
Sbjct: 13 aaaagtgcttacagtgcaggtag 35
>25703_xtr-mir-17:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 16 aaagtgcttacagtgcaggtag 37
>25704_xtr-mir-17:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 16 aaagtgcttacagtgcaggtag 37
>25897_gga-mir-17:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>25898_gga-mir-17:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>26402_tgu-mir-17a:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 4 aaagtgcttacagtgcaggtag 25
>26403_tgu-mir-17a:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 4 aaagtgcttacagtgcaggtag 25
>26627_cfa-mir-17:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 2 aaagtgcttacagtgcaggtag 23
>26682_cfa-mir-106a:mirbase
Length = 57
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 1 aaagtgcttacagtgcaggtag 22
>26949_eca-mir-17:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 2 aaagtgcttacagtgcaggtag 23
>27002_eca-mir-106a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>27335_mdo-mir-17:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>27336_mdo-mir-17:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>27481_age-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>27482_age-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>27542_lla-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>27543_lla-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>27590_sla-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>27591_sla-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>27654_mml-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>27655_mml-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>28173_mne-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>28174_mne-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>28261_ggo-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>28262_ggo-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>28364_hsa-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>30045_ppa-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>30046_ppa-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>30150_ptr-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>30151_ptr-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>30755_ppy-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>30756_ppy-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>31395_lca-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>31396_lca-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>31431_oan-mir-17:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>31779_mmu-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>32660_rno-mir-17-1:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>32661_rno-mir-17-1:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>32662_rno-mir-17-2:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 12 aaagtgcttacagtgcaggtag 33
>32663_rno-mir-17-2:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 12 aaagtgcttacagtgcaggtag 33
>33132_bta-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>33133_bta-mir-17:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>33915_ssc-mir-17:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 11 aaagtgcttacagtgcaggtag 32
>33916_ssc-mir-17:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 11 aaagtgcttacagtgcaggtag 32
>34209_dre-mir-17a-1:mirbase
Length = 138
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 42 aaagtgcttacagtgcaggtag 63
>34210_dre-mir-17a-2:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>34548_fru-mir-17-1:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>34549_fru-mir-17-2:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>34696_tni-mir-17-1:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>34697_tni-mir-17-2:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtag 36
>27369_mdo-mir-106:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 8 ttgtgcaaaagtgcttacagtgcaggtag 36
||||| ||||||||||| |||||||||||
Sbjct: 1 ttgtgtaaaagtgcttatagtgcaggtag 29
>25438_pma-mir-20a:mirbase
Length = 91
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 10 gtgcaaaagtgcttacagtgcaggtag 36
|||| |||||||||| |||||||||||
Sbjct: 12 gtgccaaagtgcttatagtgcaggtag 38
>25710_xtr-mir-20a:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 10 gtgcaaaagtgcttacagtgcaggtag 36
|||| |||||||||| |||||||||||
Sbjct: 10 gtgctaaagtgcttatagtgcaggtag 36
>34218_dre-mir-20a:mirbase
Length = 153
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 10 gtgcaaaagtgcttacagtgcaggtag 36
|||| |||||||||| |||||||||||
Sbjct: 47 gtgctaaagtgcttatagtgcaggtag 73
