miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25938_gga-mir-122-2:mirbase
Length = 77
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 1 cagagctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagagctatggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
Query: 61 taaatagctactggtag 77
|||||||||||||||||
Sbjct: 61 taaatagctactggtag 77
>31478_oan-mir-122:mirbase
Length = 111
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 1 cagagctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 21 cagagctgtggagtgtgacaatggtgtttgtgtccagtctatcaaacgccattatcacac 80
Query: 61 taaatagctactg 73
|||||||||||||
Sbjct: 81 taaatagctactg 93
>33197_bta-mir-122:mirbase
Length = 85
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 1 cagagctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7 cagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacac 66
Query: 61 taaatagctactg 73
|||||||||||||
Sbjct: 67 taaatagctactg 79
>33967_ssc-mir-122:mirbase
Length = 85
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 1 cagagctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7 cagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacac 66
Query: 61 taaatagctactg 73
|||||||||||||
Sbjct: 67 taaatagctactg 79
>27371_mdo-mir-122:mirbase
Length = 74
Score = 129 bits (65), Expect = 3e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 1 cagagctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 cagagctatggagtgtgacaatggtgtttgtgtccagtctatcaaacgccattatcacac 60
Query: 61 taaatagctactg 73
|||||||||||||
Sbjct: 61 taaatagctactg 73
>28426_hsa-mir-122:mirbase
Length = 85
Score = 129 bits (65), Expect = 3e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 1 cagagctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 7 cagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacac 66
Query: 61 taaatagctactg 73
|||||||||||||
Sbjct: 67 taaatagctactg 79
>29379_hsa-mir-3591:mirbase
Length = 73
Score = 129 bits (65), Expect = 3e-31
Identities = 71/73 (97%)
Strand = Plus / Minus
Query: 1 cagagctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 73 cagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacac 14
Query: 61 taaatagctactg 73
|||||||||||||
Sbjct: 13 taaatagctactg 1
>29380_hsa-mir-3591:mirbase
Length = 73
Score = 129 bits (65), Expect = 3e-31
Identities = 71/73 (97%)
Strand = Plus / Minus
Query: 1 cagagctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 73 cagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacac 14
Query: 61 taaatagctactg 73
|||||||||||||
Sbjct: 13 taaatagctactg 1
>30814_ppy-mir-122:mirbase
Length = 85
Score = 129 bits (65), Expect = 3e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 1 cagagctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 7 cagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacac 66
Query: 61 taaatagctactg 73
|||||||||||||
Sbjct: 67 taaatagctactg 79
>27714_mml-mir-122a:mirbase
Length = 85
Score = 127 bits (64), Expect = 1e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 1 cagagctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 7 cagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacac 66
Query: 61 taaatagctact 72
||||||||||||
Sbjct: 67 taaatagctact 78
>27006_eca-mir-122:mirbase
Length = 66
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 4 agctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacactaa 63
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 agctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaa 60
Query: 64 atagct 69
||||||
Sbjct: 61 atagct 66
>30207_ptr-mir-122:mirbase
Length = 84
Score = 121 bits (61), Expect = 7e-29
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 1 cagagctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 6 cagagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattatcacac 65
Query: 61 taaatagctactg 73
|||||||||||||
Sbjct: 66 taaatagctactg 78
>26449_tgu-mir-122:mirbase
Length = 72
Score = 117 bits (59), Expect = 1e-27
Identities = 66/67 (98%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 cagagctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3 cagagctgtggagtgtgacaatggtgtttgtgtcc-atctatcaaacgccattatcacac 61
Query: 61 taaatag 67
|||||||
Sbjct: 62 taaatag 68
>31837_mmu-mir-122:mirbase
Length = 66
Score = 115 bits (58), Expect = 5e-27
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 4 agctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacactaa 63
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 1 agctgtggagtgtgacaatggtgtttgtgtccaaaccatcaaacgccattatcacactaa 60
Query: 64 atagct 69
||||||
Sbjct: 61 atagct 66
>26685_cfa-mir-122:mirbase
Length = 58
Score = 107 bits (54), Expect = 1e-24
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 9 tggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacactaaata 66
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 tggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaaata 58
>34731_tni-mir-122:mirbase
Length = 66
Score = 107 bits (54), Expect = 1e-24
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 4 agctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacactaa 63
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 agctgtggagtgtgacaatggtgtttgtgtcctttctttcaaacgccattatcacactaa 60
Query: 64 atagct 69
||||||
Sbjct: 61 atagct 66
>32716_rno-mir-122:mirbase
Length = 85
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 1 cagagctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 7 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 66
Query: 61 taaatagctactg 73
|||| ||||||||
Sbjct: 67 taaacagctactg 79
>33091_rno-mir-3591:mirbase
Length = 109
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/73 (91%)
Strand = Plus / Minus
Query: 1 cagagctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 90 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 31
Query: 61 taaatagctactg 73
|||| ||||||||
Sbjct: 30 taaacagctactg 18
>34584_fru-mir-122:mirbase
Length = 66
Score = 91.7 bits (46), Expect = 7e-20
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 4 agctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacactaa 63
|||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||
Sbjct: 1 agctatggagtgtgacaatggtgtttgtttcctttctttcaaacgccattatcacactaa 60
Query: 64 atagct 69
||||||
Sbjct: 61 atagct 66
>25762_xtr-mir-122:mirbase
Length = 69
Score = 89.7 bits (45), Expect = 3e-19
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 3 gagctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacacta 62
||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 1 gagctatggagtgtgacaatggtgtttgtgtcagagctatcaaacgccattatcacacta 60
Query: 63 a 63
|
Sbjct: 61 a 61
>34270_dre-mir-122:mirbase
Length = 76
Score = 75.8 bits (38), Expect = 4e-15
Identities = 64/71 (90%), Gaps = 5/71 (7%)
Strand = Plus / Plus
Query: 1 cagagctgtggagtgtgacaatggtgtttgtgtccaatct---atcaaacgccattatca 57
||||||||||||||||||||||||||||||| || |||| ||||||||||||||||
Sbjct: 3 cagagctgtggagtgtgacaatggtgtttgtatc--atctgtcgtcaaacgccattatca 60
Query: 58 cactaaatagc 68
|||||||||||
Sbjct: 61 cactaaatagc 71
