miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26455_tgu-mir-126:mirbase
Length = 132
Score = 155 bits (78), Expect = 6e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 gctggtgacggcccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 gctggtgacggcccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtg 110
Query: 61 agtaataatgcgctgtgg 78
||||||||||||||||||
Sbjct: 111 agtaataatgcgctgtgg 128
>27721_mml-mir-126:mirbase
Length = 85
Score = 127 bits (64), Expect = 1e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 1 gctggtgacggcccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtg 60
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gctggtgatgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtg 61
Query: 61 agtaataatgcgctgt 76
||||||||||||||||
Sbjct: 62 agtaataatgcgctgt 77
>33204_bta-mir-126:mirbase
Length = 73
Score = 125 bits (63), Expect = 5e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 68
Query: 74 tgt 76
|||
Sbjct: 69 tgt 71
>33973_ssc-mir-126:mirbase
Length = 73
Score = 125 bits (63), Expect = 5e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 68
Query: 74 tgt 76
|||
Sbjct: 69 tgt 71
>28434_hsa-mir-126:mirbase
Length = 85
Score = 121 bits (61), Expect = 8e-29
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 1 gctggtgacggcccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtg 60
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gctggcgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtg 61
Query: 61 agtaataatgcgc 73
|||||||||||||
Sbjct: 62 agtaataatgcgc 74
>30212_ptr-mir-126:mirbase
Length = 84
Score = 121 bits (61), Expect = 8e-29
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 1 gctggtgacggcccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtg 60
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctggcgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtg 60
Query: 61 agtaataatgcgc 73
|||||||||||||
Sbjct: 61 agtaataatgcgc 73
>30821_ppy-mir-126:mirbase
Length = 81
Score = 121 bits (61), Expect = 8e-29
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 1 gctggtgacggcccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtg 60
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gctggcgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtg 61
Query: 61 agtaataatgcgc 73
|||||||||||||
Sbjct: 62 agtaataatgcgc 74
>33060_rno-mir-3567:mirbase
Length = 118
Score = 121 bits (61), Expect = 8e-29
Identities = 67/69 (97%)
Strand = Plus / Minus
Query: 4 ggtgacggcccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagt 63
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ggtgacagcacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagt 37
Query: 64 aataatgcg 72
|||||||||
Sbjct: 36 aataatgcg 28
>27013_eca-mir-126:mirbase
Length = 73
Score = 119 bits (60), Expect = 3e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 68
>27014_eca-mir-126:mirbase
Length = 73
Score = 119 bits (60), Expect = 3e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 68
>31847_mmu-mir-126:mirbase
Length = 73
Score = 119 bits (60), Expect = 3e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 68
>31848_mmu-mir-126:mirbase
Length = 73
Score = 119 bits (60), Expect = 3e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 68
>26692_cfa-mir-126:mirbase
Length = 59
Score = 117 bits (59), Expect = 1e-27
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 72
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 59
>32725_rno-mir-126:mirbase
Length = 73
Score = 117 bits (59), Expect = 1e-27
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 72
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
>31481_oan-mir-126:mirbase
Length = 110
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 11 gcccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatg 70
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 26 gcccattattacttttggtacgcgctgtgacgcttcaaactcgtaccgtgagtaataatg 85
Query: 71 cg 72
||
Sbjct: 86 cg 87
>27377_mdo-mir-126:mirbase
Length = 69
Score = 111 bits (56), Expect = 8e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 73
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5 cattattacttttggtacgcgctgtgacacatcaaactcgtaccgtgagtaataatgcgc 64
>25767_xtr-mir-126:mirbase
Length = 69
Score = 103 bits (52), Expect = 2e-23
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 73
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 8 cattattacttttggtacgcgctgtgtcacatcaaactcgtaccgtgagtaataatgcgc 67
>34590_fru-mir-126:mirbase
Length = 63
Score = 85.7 bits (43), Expect = 5e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 9 cggcccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataa 68
|||||||||||||||||||||||||||| || |||| |||||||||||||||||||||
Sbjct: 1 cggcccattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataa 60
Query: 69 tgc 71
|||
Sbjct: 61 tgc 63
>34737_tni-mir-126:mirbase
Length = 63
Score = 85.7 bits (43), Expect = 5e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 9 cggcccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataa 68
|||||||||||||||||||||||||||| || |||| |||||||||||||||||||||
Sbjct: 1 cggcccattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataa 60
Query: 69 tgc 71
|||
Sbjct: 61 tgc 63
>34284_dre-mir-126b:mirbase
Length = 103
Score = 71.9 bits (36), Expect = 7e-14
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 73
||||||||||||||||||||||| || |||| |||||||||||||||||||| ||| |
Sbjct: 23 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaatagtgcac 82
Query: 74 tgtg 77
||||
Sbjct: 83 tgtg 86
>34283_dre-mir-126a:mirbase
Length = 101
Score = 69.9 bits (35), Expect = 3e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 13 ccattattacttttggtacgcgctgtgacact-tcaaactcgtaccgtgagtaataatgc 71
|||||||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct: 25 ccattattacttttggtacgcgctaggccagactcaaactcgtaccgtgagtaataatgc 84
Query: 72 gctgtgg 78
||||||
Sbjct: 85 actgtgg 91
>24832_cin-mir-126:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 ctcgtaccgtgagtaataa 68
|||||||||||||||||||
Sbjct: 49 ctcgtaccgtgagtaataa 67
>25326_csa-mir-126:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 ctcgtaccgtgagtaataa 68
|||||||||||||||||||
Sbjct: 65 ctcgtaccgtgagtaataa 83
>25475_pma-mir-126:mirbase
Length = 72
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 ctcgtaccgtgagtaataa 68
|||||||||||||||||||
Sbjct: 44 ctcgtaccgtgagtaataa 62
