miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>26457_tgu-mir-128-2:mirbase
          Length = 110

 Score =  155 bits (78), Expect = 6e-39
 Identities = 78/78 (100%)
 Strand = Plus / Plus

                                                                      
Query: 7  gctggaaggggggccgttacactgtaagagagtgagtagcaggtctcacagtgaaccggt 66
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 gctggaaggggggccgttacactgtaagagagtgagtagcaggtctcacagtgaaccggt 81

                            
Query: 67 ctcttttcctgctgtgtc 84
          ||||||||||||||||||
Sbjct: 82 ctcttttcctgctgtgtc 99




>27378_mdo-mir-128:mirbase
          Length = 84

 Score =  131 bits (66), Expect = 9e-32
 Identities = 75/78 (96%)
 Strand = Plus / Plus

                                                                      
Query: 5  cagctggaaggggggccgttacactgtaagagagtgagtagcaggtctcacagtgaaccg 64
          |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5  cagcaggaaggggggccgttacactgtcagagagtgagtagcaggtctcacagtgaaccg 64

                            
Query: 65 gtctcttttcctgctgtg 82
          |||||||| |||||||||
Sbjct: 65 gtctctttccctgctgtg 82




>25769_xtr-mir-128-2:mirbase
          Length = 80

 Score =  123 bits (62), Expect = 2e-29
 Identities = 68/70 (97%)
 Strand = Plus / Plus

                                                                      
Query: 5  cagctggaaggggggccgttacactgtaagagagtgagtagcaggtctcacagtgaaccg 64
          ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 4  cagctggaacgggggccgttacactgtaagagagtgagtagtaggtctcacagtgaaccg 63

                    
Query: 65 gtctcttttc 74
          ||||||||||
Sbjct: 64 gtctcttttc 73




>31483_oan-mir-128-2:mirbase
          Length = 111

 Score =  119 bits (60), Expect = 3e-28
 Identities = 66/68 (97%)
 Strand = Plus / Plus

                                                                      
Query: 5  cagctggaaggggggccgttacactgtaagagagtgagtagcaggtctcacagtgaaccg 64
          |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 18 cagccggaaggggggccgttacactgtaagagagtgagtaccaggtctcacagtgaaccg 77

                  
Query: 65 gtctcttt 72
          ||||||||
Sbjct: 78 gtctcttt 85




>27724_mml-mir-128b:mirbase
          Length = 84

 Score =  117 bits (59), Expect = 1e-27
 Identities = 71/75 (94%)
 Strand = Plus / Plus

                                                                      
Query: 10 ggaaggggggccgttacactgtaagagagtgagtagcaggtctcacagtgaaccggtctc 69
          ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 10 ggaaggggggccgatacactgtacgagagtgagtagcaggtctcacagtgaaccggtctc 69

                         
Query: 70 ttttcctgctgtgtc 84
          ||| ||| |||||||
Sbjct: 70 tttccctactgtgtc 84




>28438_hsa-mir-128-2:mirbase
          Length = 84

 Score =  117 bits (59), Expect = 1e-27
 Identities = 71/75 (94%)
 Strand = Plus / Plus

                                                                      
Query: 10 ggaaggggggccgttacactgtaagagagtgagtagcaggtctcacagtgaaccggtctc 69
          ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 10 ggaaggggggccgatacactgtacgagagtgagtagcaggtctcacagtgaaccggtctc 69

                         
Query: 70 ttttcctgctgtgtc 84
          ||| ||| |||||||
Sbjct: 70 tttccctactgtgtc 84




>30215_ptr-mir-128-2:mirbase
          Length = 83

 Score =  117 bits (59), Expect = 1e-27
 Identities = 71/75 (94%)
 Strand = Plus / Plus

                                                                      
Query: 10 ggaaggggggccgttacactgtaagagagtgagtagcaggtctcacagtgaaccggtctc 69
          ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 9  ggaaggggggccgatacactgtacgagagtgagtagcaggtctcacagtgaaccggtctc 68

                         
Query: 70 ttttcctgctgtgtc 84
          ||| ||| |||||||
Sbjct: 69 tttccctactgtgtc 83




>30824_ppy-mir-128-2:mirbase
          Length = 84

 Score =  117 bits (59), Expect = 1e-27
 Identities = 71/75 (94%)
 Strand = Plus / Plus

                                                                      
Query: 10 ggaaggggggccgttacactgtaagagagtgagtagcaggtctcacagtgaaccggtctc 69
          ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 10 ggaaggggggccgatacactgtacgagagtgagtagcaggtctcacagtgaaccggtctc 69

                         
Query: 70 ttttcctgctgtgtc 84
          ||| ||| |||||||
Sbjct: 70 tttccctactgtgtc 84




>32728_rno-mir-128-2:mirbase
          Length = 84

 Score =  117 bits (59), Expect = 1e-27
 Identities = 71/75 (94%)
 Strand = Plus / Plus

                                                                      
Query: 10 ggaaggggggccgttacactgtaagagagtgagtagcaggtctcacagtgaaccggtctc 69
          ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ggaaggggggccgatgcactgtaagagagtgagtagcaggtctcacagtgaaccggtctc 69

                         
Query: 70 ttttcctgctgtgtc 84
          ||| ||| |||||||
Sbjct: 70 tttccctactgtgtc 84




>27016_eca-mir-128:mirbase
          Length = 84

 Score =  109 bits (55), Expect = 3e-25
 Identities = 70/75 (93%)
 Strand = Plus / Plus

                                                                      
Query: 10 ggaaggggggccgttacactgtaagagagtgagtagcaggtctcacagtgaaccggtctc 69
          ||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 10 ggaaggggggccgatgcactgtacgagagtgagtagcaggtctcacagtgaaccggtctc 69

                         
Query: 70 ttttcctgctgtgtc 84
          ||| ||| |||||||
Sbjct: 70 tttccctactgtgtc 84




>31851_mmu-mir-128-2:mirbase
          Length = 76

 Score =  109 bits (55), Expect = 3e-25
 Identities = 61/63 (96%)
 Strand = Plus / Plus

                                                                      
Query: 10 ggaaggggggccgttacactgtaagagagtgagtagcaggtctcacagtgaaccggtctc 69
          ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6  ggaaggggggccgatgcactgtaagagagtgagtagcaggtctcacagtgaaccggtctc 65

             
Query: 70 ttt 72
          |||
Sbjct: 66 ttt 68




>26695_cfa-mir-128-2:mirbase
          Length = 58

 Score = 99.6 bits (50), Expect = 3e-22
 Identities = 56/58 (96%)
 Strand = Plus / Plus

                                                                    
Query: 15 gggggccgttacactgtaagagagtgagtagcaggtctcacagtgaaccggtctcttt 72
          |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gggggccgatacactgtacgagagtgagtagcaggtctcacagtgaaccggtctcttt 58




>33207_bta-mir-128-2:mirbase
          Length = 84

 Score = 93.7 bits (47), Expect = 2e-20
 Identities = 68/75 (90%)
 Strand = Plus / Plus

                                                                      
Query: 10 ggaaggggggccgttacactgtaagagagtgagtagcaggtctcacagtgaaccggtctc 69
          |||||||||||||   ||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 10 ggaaggggggccgaggcactgtccgagagtgagtagcaggtctcacagtgaaccggtctc 69

                         
Query: 70 ttttcctgctgtgtc 84
          ||| ||| |||||||
Sbjct: 70 tttccctactgtgtc 84




>33976_ssc-mir-128-2:mirbase
          Length = 80

 Score = 91.7 bits (46), Expect = 7e-20
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                      
Query: 10 ggaaggggggccgttacactgtaagagagtgagtagcaggtctcacagtgaaccggtctc 69
          |||||||||||||   ||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 7  ggaaggggggccgaggcactgtccgagagtgagtagcaggtctcacagtgaaccggtctc 66

                        
Query: 70 ttttcctgctgtgt 83
          ||| ||| ||||||
Sbjct: 67 tttccctactgtgt 80




>34592_fru-mir-128-2:mirbase
          Length = 72

 Score = 65.9 bits (33), Expect = 4e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 48 ggtctcacagtgaaccggtctcttttcctgctg 80
          |||||||||||||||||||||||||||||||||
Sbjct: 40 ggtctcacagtgaaccggtctcttttcctgctg 72




>34739_tni-mir-128-2:mirbase
          Length = 72

 Score = 65.9 bits (33), Expect = 4e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 48 ggtctcacagtgaaccggtctcttttcctgctg 80
          |||||||||||||||||||||||||||||||||
Sbjct: 40 ggtctcacagtgaaccggtctcttttcctgctg 72




>34286_dre-mir-128-2:mirbase
          Length = 123

 Score = 61.9 bits (31), Expect = 7e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 49 gtctcacagtgaaccggtctcttttcctgct 79
          |||||||||||||||||||||||||||||||
Sbjct: 66 gtctcacagtgaaccggtctcttttcctgct 96




>34591_fru-mir-128-1:mirbase
          Length = 85

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 tctcacagtgaaccggtctcttttcc 75
          ||||||||||||||||||||||||||
Sbjct: 49 tctcacagtgaaccggtctcttttcc 74




>25476_pma-mir-128-1:mirbase
          Length = 89

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 49 gtctcacagtgaaccggtctcttttcctg 77
          |||||||||||||||||||||||| ||||
Sbjct: 53 gtctcacagtgaaccggtctctttccctg 81




>31482_oan-mir-128-1:mirbase
          Length = 71

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 49 gtctcacagtgaaccggtctctttt 73
          |||||||||||||||||||||||||
Sbjct: 41 gtctcacagtgaaccggtctctttt 65




>25477_pma-mir-128-2:mirbase
          Length = 89

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 50 tctcacagtgaaccggtctcttttcctg 77
          ||||||||||||||||||||||| ||||
Sbjct: 54 tctcacagtgaaccggtctctttccctg 81




>25768_xtr-mir-128-1:mirbase
          Length = 83

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 50 tctcacagtgaaccggtctctttt 73
          ||||||||||||||||||||||||
Sbjct: 49 tctcacagtgaaccggtctctttt 72




>25945_gga-mir-128-1:mirbase
          Length = 82

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 50 tctcacagtgaaccggtctctttt 73
          ||||||||||||||||||||||||
Sbjct: 48 tctcacagtgaaccggtctctttt 71




>26456_tgu-mir-128-1:mirbase
          Length = 71

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 50 tctcacagtgaaccggtctctttt 73
          ||||||||||||||||||||||||
Sbjct: 39 tctcacagtgaaccggtctctttt 62




>27017_eca-mir-128-2:mirbase
          Length = 70

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 50 tctcacagtgaaccggtctctttt 73
          ||||||||||||||||||||||||
Sbjct: 42 tctcacagtgaaccggtctctttt 65




>27510_age-mir-128:mirbase
          Length = 82

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 50 tctcacagtgaaccggtctctttt 73
          ||||||||||||||||||||||||
Sbjct: 48 tctcacagtgaaccggtctctttt 71




>27617_sla-mir-128:mirbase
          Length = 82

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 50 tctcacagtgaaccggtctctttt 73
          ||||||||||||||||||||||||
Sbjct: 48 tctcacagtgaaccggtctctttt 71




>27723_mml-mir-128a:mirbase
          Length = 82

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 50 tctcacagtgaaccggtctctttt 73
          ||||||||||||||||||||||||
Sbjct: 48 tctcacagtgaaccggtctctttt 71




>28437_hsa-mir-128-1:mirbase
          Length = 82

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 50 tctcacagtgaaccggtctctttt 73
          ||||||||||||||||||||||||
Sbjct: 48 tctcacagtgaaccggtctctttt 71




>30089_ppa-mir-128:mirbase
          Length = 82

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 50 tctcacagtgaaccggtctctttt 73
          ||||||||||||||||||||||||
Sbjct: 48 tctcacagtgaaccggtctctttt 71




>30214_ptr-mir-128-1:mirbase
          Length = 82

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 50 tctcacagtgaaccggtctctttt 73
          ||||||||||||||||||||||||
Sbjct: 48 tctcacagtgaaccggtctctttt 71




>30823_ppy-mir-128:mirbase
          Length = 82

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 50 tctcacagtgaaccggtctctttt 73
          ||||||||||||||||||||||||
Sbjct: 48 tctcacagtgaaccggtctctttt 71




>31850_mmu-mir-128-1:mirbase
          Length = 70

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 50 tctcacagtgaaccggtctctttt 73
          ||||||||||||||||||||||||
Sbjct: 42 tctcacagtgaaccggtctctttt 65




>32727_rno-mir-128-1:mirbase
          Length = 82

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 50 tctcacagtgaaccggtctctttt 73
          ||||||||||||||||||||||||
Sbjct: 48 tctcacagtgaaccggtctctttt 71




>33206_bta-mir-128-1:mirbase
          Length = 82

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 50 tctcacagtgaaccggtctctttt 73
          ||||||||||||||||||||||||
Sbjct: 48 tctcacagtgaaccggtctctttt 71




>33975_ssc-mir-128-1:mirbase
          Length = 82

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 50 tctcacagtgaaccggtctctttt 73
          ||||||||||||||||||||||||
Sbjct: 48 tctcacagtgaaccggtctctttt 71




>34285_dre-mir-128-1:mirbase
          Length = 98

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 50 tctcacagtgaaccggtctctttt 73
          ||||||||||||||||||||||||
Sbjct: 58 tctcacagtgaaccggtctctttt 81




>34738_tni-mir-128-1:mirbase
          Length = 72

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 50 tctcacagtgaaccggtctctttt 73
          ||||||||||||||||||||||||
Sbjct: 44 tctcacagtgaaccggtctctttt 67




>26694_cfa-mir-128-1:mirbase
          Length = 56

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 50 tctcacagtgaaccggtctcttt 72
          |||||||||||||||||||||||
Sbjct: 34 tctcacagtgaaccggtctcttt 56