miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26460_tgu-mir-130b:mirbase
Length = 132
Score = 147 bits (74), Expect = 1e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 4 cgggctgcccctctttccctgttgcactactgtcacggtcgcagcgagcagtgcaataat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 cgggctgcccctctttccctgttgcactactgtcacggtcgcagcgagcagtgcaataat 112
Query: 64 gaaagggcgtcagt 77
||||||||||||||
Sbjct: 113 gaaagggcgtcagt 126
>34291_dre-mir-130b:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 14 ctctttccctgttgcactactgtcacggtcgcagcga-gcagtgcaataatgaaagggcg 72
||||||||||||||||||||||| | ||||| | |||||||||||||||||||||
Sbjct: 14 ctctttccctgttgcactactgtgggagctgcagcaaagcagtgcaataatgaaagggca 73
Query: 73 tcagt 77
|||||
Sbjct: 74 tcagt 78
>25773_xtr-mir-130b:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 ctctttccctgttgcactactgt 36
|||||||||||||||||||||||
Sbjct: 11 ctctttccctgttgcactactgt 33
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 50 agcagtgcaataatgaaagggcgtcagt 77
||||||||||| |||||||||| |||||
Sbjct: 46 agcagtgcaatgatgaaagggcatcagt 73
>26699_cfa-mir-130b:mirbase
Length = 60
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 ctctttccctgttgcactactgt 36
|||||||||||||||||||||||
Sbjct: 2 ctctttccctgttgcactactgt 24
>27023_eca-mir-130b:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 ctctttccctgttgcactactgt 36
|||||||||||||||||||||||
Sbjct: 14 ctctttccctgttgcactactgt 36
>27729_mml-mir-130b:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 ctctttccctgttgcactactgt 36
|||||||||||||||||||||||
Sbjct: 14 ctctttccctgttgcactactgt 36
>31857_mmu-mir-130b:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 ctctttccctgttgcactactgt 36
|||||||||||||||||||||||
Sbjct: 14 ctctttccctgttgcactactgt 36
>32732_rno-mir-130b:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 ctctttccctgttgcactactgt 36
|||||||||||||||||||||||
Sbjct: 14 ctctttccctgttgcactactgt 36
>33212_bta-mir-130b:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 ctctttccctgttgcactactgt 36
|||||||||||||||||||||||
Sbjct: 14 ctctttccctgttgcactactgt 36
>33980_ssc-mir-130b:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 ctctttccctgttgcactactgt 36
|||||||||||||||||||||||
Sbjct: 13 ctctttccctgttgcactactgt 35
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 50 agcagtgcaataatgaaagggcgtcagt 77
||||||||||| |||||||||| |||||
Sbjct: 48 agcagtgcaatgatgaaagggcatcagt 75
>28443_hsa-mir-130b:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 ctctttccctgttgcactact 34
|||||||||||||||||||||
Sbjct: 14 ctctttccctgttgcactact 34
>30219_ptr-mir-130b:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 ctctttccctgttgcactact 34
|||||||||||||||||||||
Sbjct: 13 ctctttccctgttgcactact 33
>30828_ppy-mir-130b:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 ctctttccctgttgcactact 34
|||||||||||||||||||||
Sbjct: 14 ctctttccctgttgcactact 34
