miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33173_bta-mir-33a:mirbase
Length = 69
Score = 121 bits (61), Expect = 5e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcatc 65
Query: 61 a 61
|
Sbjct: 66 a 66
>26982_eca-mir-33a:mirbase
Length = 69
Score = 113 bits (57), Expect = 1e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcatc 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctggcggtacccatgcaatgtttccacagtgcatc 65
Query: 61 a 61
|
Sbjct: 66 a 66
>28284_ggo-mir-33:mirbase
Length = 69
Score = 105 bits (53), Expect = 3e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcatc 60
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcatc 65
Query: 61 a 61
|
Sbjct: 66 a 66
>28399_hsa-mir-33a:mirbase
Length = 69
Score = 105 bits (53), Expect = 3e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcatc 60
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcatc 65
Query: 61 a 61
|
Sbjct: 66 a 66
>30071_ppa-mir-33:mirbase
Length = 69
Score = 105 bits (53), Expect = 3e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcatc 60
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcatc 65
Query: 61 a 61
|
Sbjct: 66 a 66
>30185_ptr-mir-33a:mirbase
Length = 69
Score = 105 bits (53), Expect = 3e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcatc 60
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcatc 65
Query: 61 a 61
|
Sbjct: 66 a 66
>30789_ppy-mir-33:mirbase
Length = 69
Score = 105 bits (53), Expect = 3e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcatc 60
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcatc 65
Query: 61 a 61
|
Sbjct: 66 a 66
>32696_rno-mir-33:mirbase
Length = 69
Score = 105 bits (53), Expect = 3e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcatc 60
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgcatc 65
Query: 61 a 61
|
Sbjct: 66 a 66
>27689_mml-mir-33a:mirbase
Length = 69
Score = 101 bits (51), Expect = 5e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcat 59
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcat 64
>28196_mne-mir-33:mirbase
Length = 69
Score = 101 bits (51), Expect = 5e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcat 59
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcat 64
>31814_mmu-mir-33:mirbase
Length = 69
Score = 97.6 bits (49), Expect = 8e-22
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcatc 60
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctggcaatacctgtgcaatgtttccacagtgcatc 65
Query: 61 a 61
|
Sbjct: 66 a 66
>31460_oan-mir-33b:mirbase
Length = 85
Score = 69.9 bits (35), Expect = 2e-13
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcat 59
||||||||||||||||||||| |||| ||| |||| |||||||||| |||||||||||
Sbjct: 14 gtgcattgtagttgcattgcacgttccggcagtactggtgcaatgttcccacagtgcat 72
>31461_oan-mir-33b:mirbase
Length = 85
Score = 69.9 bits (35), Expect = 2e-13
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcat 59
||||||||||||||||||||| |||| ||| |||| |||||||||| |||||||||||
Sbjct: 14 gtgcattgtagttgcattgcacgttccggcagtactggtgcaatgttcccacagtgcat 72
>25924_gga-mir-33:mirbase
Length = 69
Score = 61.9 bits (31), Expect = 4e-11
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtt 47
|||||||||||||||||||||||| ||||| ||| | ||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgtgctggcagtaactgtgcaatgtt 52
>26431_tgu-mir-33:mirbase
Length = 70
Score = 60.0 bits (30), Expect = 2e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgca 58
||||||||||||||||||||||||| |||| || | |||||||||||| |||||||
Sbjct: 11 gtgcattgtagttgcattgcatgttgtggcagtgactgtgcaatgtttctgcagtgca 68
>27359_mdo-mir-33:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 36 ccgtgcaatgtttccacagtgcatc 60
|||||||||||||||||||||||||
Sbjct: 36 ccgtgcaatgtttccacagtgcatc 60
>37721_tca-mir-33:mirbase
Length = 102
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgtt 25
|||||||||||||||||||||||||
Sbjct: 25 gtgcattgtagttgcattgcatgtt 49
>37722_tca-mir-33:mirbase
Length = 102
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgtt 25
|||||||||||||||||||||||||
Sbjct: 25 gtgcattgtagttgcattgcatgtt 49
>24657_bfl-mir-33-1:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgt 24
||||||||||||||||||||||||
Sbjct: 7 gtgcattgtagttgcattgcatgt 30
>24658_bfl-mir-33-2:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgt 24
||||||||||||||||||||||||
Sbjct: 16 gtgcattgtagttgcattgcatgt 39
>25740_xtr-mir-33a:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgt 24
||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgt 29
>31458_oan-mir-33a:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgt 24
||||||||||||||||||||||||
Sbjct: 22 gtgcattgtagttgcattgcatgt 45
>31459_oan-mir-33a:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgt 24
||||||||||||||||||||||||
Sbjct: 22 gtgcattgtagttgcattgcatgt 45
>38738_cte-mir-33:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatg 23
|||||||||||||||||||||||
Sbjct: 21 gtgcattgtagttgcattgcatg 43
>35357_ame-mir-33:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatg 23
|||||||||||||||||||||||
Sbjct: 31 gtgcattgtagttgcattgcatg 53
>37644_nvi-mir-33:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatg 23
|||||||||||||||||||||||
Sbjct: 31 gtgcattgtagttgcattgcatg 53
>38857_lgi-mir-33:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcat 22
||||||||||||||||||||||
Sbjct: 21 gtgcattgtagttgcattgcat 42
>24815_cin-mir-33:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgca 21
|||||||||||||||||||||
Sbjct: 16 gtgcattgtagttgcattgca 36
>35004_dpu-mir-33:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgca 21
|||||||||||||||||||||
Sbjct: 21 gtgcattgtagttgcattgca 41
>35183_aae-mir-33:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgca 21
|||||||||||||||||||||
Sbjct: 9 gtgcattgtagttgcattgca 29
>35530_bmo-mir-33:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgca 21
|||||||||||||||||||||
Sbjct: 11 gtgcattgtagttgcattgca 31
>36014_cqu-mir-33:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgca 21
|||||||||||||||||||||
Sbjct: 3 gtgcattgtagttgcattgca 23
>25741_xtr-mir-33b:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattgcatgt 24
||||||||| ||||||||||||||
Sbjct: 6 gtgcattgttgttgcattgcatgt 29
>25464_pma-mir-33a:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gtgcattgtagttgcattg 19
|||||||||||||||||||
Sbjct: 16 gtgcattgtagttgcattg 34
