miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>28403_hsa-mir-34c:mirbase
          Length = 77

 Score =  109 bits (55), Expect = 2e-25
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                 
Query: 1  aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 67




>28404_hsa-mir-34c:mirbase
          Length = 77

 Score =  109 bits (55), Expect = 2e-25
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                 
Query: 1  aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 67




>30189_ptr-mir-34c:mirbase
          Length = 76

 Score =  109 bits (55), Expect = 2e-25
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                 
Query: 1  aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 66




>30793_ppy-mir-34c:mirbase
          Length = 77

 Score =  109 bits (55), Expect = 2e-25
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                 
Query: 1  aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 67




>30794_ppy-mir-34c:mirbase
          Length = 77

 Score =  109 bits (55), Expect = 2e-25
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                 
Query: 1  aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 67




>26987_eca-mir-34c:mirbase
          Length = 77

 Score =  101 bits (51), Expect = 4e-23
 Identities = 54/55 (98%)
 Strand = Plus / Plus

                                                                 
Query: 1  aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
          |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattgctaataataccaatcactaaccacacggccagg 67




>27693_mml-mir-34c:mirbase
          Length = 77

 Score =  101 bits (51), Expect = 4e-23
 Identities = 54/55 (98%)
 Strand = Plus / Plus

                                                                 
Query: 1  aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
          |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattgctgatagtaccaatcactaaccacacggccagg 67




>27694_mml-mir-34c:mirbase
          Length = 77

 Score =  101 bits (51), Expect = 4e-23
 Identities = 54/55 (98%)
 Strand = Plus / Plus

                                                                 
Query: 1  aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
          |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattgctgatagtaccaatcactaaccacacggccagg 67




>31818_mmu-mir-34c:mirbase
          Length = 77

 Score =  101 bits (51), Expect = 4e-23
 Identities = 54/55 (98%)
 Strand = Plus / Plus

                                                                 
Query: 1  aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
          |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 13 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacagccagg 67




>32699_rno-mir-34c:mirbase
          Length = 77

 Score =  101 bits (51), Expect = 4e-23
 Identities = 54/55 (98%)
 Strand = Plus / Plus

                                                                 
Query: 1  aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
          |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 13 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacagccagg 67




>33177_bta-mir-34c:mirbase
          Length = 77

 Score =  101 bits (51), Expect = 4e-23
 Identities = 54/55 (98%)
 Strand = Plus / Plus

                                                                 
Query: 1  aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
          |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattgctaataataccaatcactaaccacacggccagg 67




>33949_ssc-mir-34c:mirbase
          Length = 80

 Score = 85.7 bits (43), Expect = 3e-18
 Identities = 52/55 (94%)
 Strand = Plus / Plus

                                                                 
Query: 1  aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
          |||||||||||||||||||||||| |||  |||||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattgctgataaaaccaatcactaaccacacggccagg 67




>25927_gga-mir-34c:mirbase
          Length = 74

 Score = 69.9 bits (35), Expect = 2e-13
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                 
Query: 1  aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
          ||||||||||||||||||||||| |  || |||||||||||||||||| ||||||
Sbjct: 13 aggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccagg 67




>31462_oan-mir-34:mirbase
          Length = 90

 Score = 69.9 bits (35), Expect = 2e-13
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                 
Query: 1  aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
          ||||||||||||||||||||||||| ||  ||||||||||| |||||| ||||||
Sbjct: 21 aggcagtgtagttagctgattgctattaacaccaatcactagccacacagccagg 75




>26433_tgu-mir-34b:mirbase
          Length = 73

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  aggcagtgtagttagctgattgc 23
          |||||||||||||||||||||||
Sbjct: 41 aggcagtgtagttagctgattgc 63




>25743_xtr-mir-34b-1:mirbase
          Length = 85

 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  aggcagtgtagttagctgattg 22
          ||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34




>25744_xtr-mir-34b-2:mirbase
          Length = 67

 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  aggcagtgtagttagctgattg 22
          ||||||||||||||||||||||
Sbjct: 4  aggcagtgtagttagctgattg 25




>25745_xtr-mir-34b-3:mirbase
          Length = 85

 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  aggcagtgtagttagctgattg 22
          ||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34




>25746_xtr-mir-34b-4:mirbase
          Length = 67

 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  aggcagtgtagttagctgattg 22
          ||||||||||||||||||||||
Sbjct: 4  aggcagtgtagttagctgattg 25




>25926_gga-mir-34b:mirbase
          Length = 84

 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  aggcagtgtagttagctgattg 22
          ||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35




>26434_tgu-mir-34c-1:mirbase
          Length = 77

 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  aggcagtgtagttagctgattg 22
          ||||||||||||||||||||||
Sbjct: 11 aggcagtgtagttagctgattg 32




>26435_tgu-mir-34c-2:mirbase
          Length = 77

 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  aggcagtgtagttagctgattg 22
          ||||||||||||||||||||||
Sbjct: 11 aggcagtgtagttagctgattg 32