miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>33901_ssc-let-7e:mirbase
          Length = 80

 Score =  155 bits (78), Expect = 5e-39
 Identities = 78/78 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  cccgggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacgg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3  cccgggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacgg 62

                            
Query: 61 cctcctagctttccccag 78
          ||||||||||||||||||
Sbjct: 63 cctcctagctttccccag 80




>27635_mml-let-7e:mirbase
          Length = 79

 Score =  149 bits (75), Expect = 3e-37
 Identities = 78/79 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  cccgggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacgg 60
          ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1  cccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacgg 60

                             
Query: 61 cctcctagctttccccagg 79
          |||||||||||||||||||
Sbjct: 61 cctcctagctttccccagg 79




>28345_hsa-let-7e:mirbase
          Length = 79

 Score =  149 bits (75), Expect = 3e-37
 Identities = 78/79 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  cccgggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacgg 60
          ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1  cccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacgg 60

                             
Query: 61 cctcctagctttccccagg 79
          |||||||||||||||||||
Sbjct: 61 cctcctagctttccccagg 79




>30737_ppy-let-7e:mirbase
          Length = 79

 Score =  149 bits (75), Expect = 3e-37
 Identities = 78/79 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  cccgggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacgg 60
          ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1  cccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacgg 60

                             
Query: 61 cctcctagctttccccagg 79
          |||||||||||||||||||
Sbjct: 61 cctcctagctttccccagg 79




>33114_bta-let-7e:mirbase
          Length = 79

 Score =  149 bits (75), Expect = 3e-37
 Identities = 78/79 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  cccgggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacgg 60
          ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1  cccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacgg 60

                             
Query: 61 cctcctagctttccccagg 79
          |||||||||||||||||||
Sbjct: 61 cctcctagctttccccagg 79




>30132_ptr-let-7e:mirbase
          Length = 78

 Score =  147 bits (74), Expect = 1e-36
 Identities = 77/78 (98%)
 Strand = Plus / Plus

                                                                      
Query: 2  ccgggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggc 61
          |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1  ccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggc 60

                            
Query: 62 ctcctagctttccccagg 79
          ||||||||||||||||||
Sbjct: 61 ctcctagctttccccagg 78




>26609_cfa-let-7e:mirbase
          Length = 67

 Score =  133 bits (67), Expect = 2e-32
 Identities = 67/67 (100%)
 Strand = Plus / Plus

                                                                      
Query: 8  tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 60

                 
Query: 68 gctttcc 74
          |||||||
Sbjct: 61 gctttcc 67




>31758_mmu-let-7e:mirbase
          Length = 93

 Score =  133 bits (67), Expect = 2e-32
 Identities = 76/79 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  cccgggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacgg 60
          |||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||
Sbjct: 8  cccgggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacgg 67

                             
Query: 61 cctcctagctttccccagg 79
          |||||||||||||||||||
Sbjct: 68 cctcctagctttccccagg 86




>32644_rno-let-7e:mirbase
          Length = 93

 Score =  133 bits (67), Expect = 2e-32
 Identities = 76/79 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  cccgggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacgg 60
          |||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||
Sbjct: 8  cccgggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacgg 67

                             
Query: 61 cctcctagctttccccagg 79
          |||||||||||||||||||
Sbjct: 68 cctcctagctttccccagg 86




>33100_rno-mir-3596c:mirbase
          Length = 117

 Score =  133 bits (67), Expect = 2e-32
 Identities = 76/79 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccgggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacgg 60
           |||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||
Sbjct: 101 cccgggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacgg 42

                              
Query: 61  cctcctagctttccccagg 79
           |||||||||||||||||||
Sbjct: 41  cctcctagctttccccagg 23




>25676_xtr-let-7a:mirbase
          Length = 89

 Score = 69.9 bits (35), Expect = 2e-13
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctc 64
          ||||||||||| ||||||||||||||||||  ||||| | |||||| ||| ||| |||||
Sbjct: 11 ggctgaggtagtaggttgtatagttgaggataacaccaaaggagataactgtacagcctc 70

                     
Query: 65 ctagctttccc 75
          ||| |||||||
Sbjct: 71 ctatctttccc 81




>34525_fru-let-7a-1:mirbase
          Length = 74

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                      
Query: 8  tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 67
          |||||||| ||||||||||||||||   ||||||   |||||| ||| ||| ||||||||
Sbjct: 6  tgaggtagtaggttgtatagttgagagtgacaccacaggagatgactgtacagcctccta 65

                  
Query: 68 gctttccc 75
          ||||||||
Sbjct: 66 gctttccc 73




>34673_tni-let-7a-1:mirbase
          Length = 74

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                      
Query: 8  tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 67
          |||||||| ||||||||||||||||   ||||||   |||||| ||| ||| ||||||||
Sbjct: 6  tgaggtagtaggttgtatagttgagagtgacaccacaggagataactgtacagcctccta 65

                  
Query: 68 gctttccc 75
          ||||||||
Sbjct: 66 gctttccc 73




>25411_pma-let-7a-4:mirbase
          Length = 85

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                      
Query: 3  cgggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcc 62
          |||| |||||||| ||||||||||||| || |  ||||| |||||||| ||| |||  ||
Sbjct: 6  cggggtgaggtagtaggttgtatagtttagcattacacctacggagataactgtacaacc 65

                        
Query: 63 tcctagctttcccc 76
          | ||||||||||||
Sbjct: 66 ttctagctttcccc 79




>27630_mml-let-7a-2:mirbase
          Length = 72

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctc 64
          ||||||||||| ||||||||||||| || |  ||| | | |||||| ||| ||| |||||
Sbjct: 2  ggctgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctc 61

                    
Query: 65 ctagctttcc 74
          ||||||||||
Sbjct: 62 ctagctttcc 71




>25869_gga-let-7a-2:mirbase
          Length = 72

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                      
Query: 8  tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 67
          |||||||| ||||||||||||| || |  ||||| | |||||| ||| |||  |||||||
Sbjct: 5  tgaggtagtaggttgtatagtttagaattacaccaagggagataactgtacaacctccta 64

                 
Query: 68 gctttcc 74
          |||||||
Sbjct: 65 gctttcc 71




>26376_tgu-let-7a-2:mirbase
          Length = 92

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                      
Query: 8  tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 67
          |||||||| ||||||||||||| || |  ||||| | |||||| ||| |||  |||||||
Sbjct: 11 tgaggtagtaggttgtatagtttagaattacaccaagggagataactgtacaacctccta 70

                 
Query: 68 gctttcc 74
          |||||||
Sbjct: 71 gctttcc 77




>26606_cfa-let-7a-2:mirbase
          Length = 96

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                      
Query: 8  tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 67
          |||||||| ||||||||||||| || |  ||| | | |||||| ||| ||| ||||||||
Sbjct: 17 tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 76

                 
Query: 68 gctttcc 74
          |||||||
Sbjct: 77 gctttcc 83




>26929_eca-let-7a:mirbase
          Length = 72

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                      
Query: 8  tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 67
          |||||||| ||||||||||||| || |  ||| | | |||||| ||| ||| ||||||||
Sbjct: 5  tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 64

                 
Query: 68 gctttcc 74
          |||||||
Sbjct: 65 gctttcc 71




>27319_mdo-let-7a-2:mirbase
          Length = 73

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                      
Query: 8  tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 67
          |||||||| ||||||||||||| || |  ||| | | |||||| ||| ||| ||||||||
Sbjct: 5  tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 64

                 
Query: 68 gctttcc 74
          |||||||
Sbjct: 65 gctttcc 71




>28340_hsa-let-7a-2:mirbase
          Length = 72

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                      
Query: 8  tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 67
          |||||||| ||||||||||||| || |  ||| | | |||||| ||| ||| ||||||||
Sbjct: 5  tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 64

                 
Query: 68 gctttcc 74
          |||||||
Sbjct: 65 gctttcc 71




>30127_ptr-let-7a-2:mirbase
          Length = 71

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                      
Query: 8  tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 67
          |||||||| ||||||||||||| || |  ||| | | |||||| ||| ||| ||||||||
Sbjct: 5  tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 64

                 
Query: 68 gctttcc 74
          |||||||
Sbjct: 65 gctttcc 71




>30732_ppy-let-7a-2:mirbase
          Length = 72

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                      
Query: 8  tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 67
          |||||||| ||||||||||||| || |  ||| | | |||||| ||| ||| ||||||||
Sbjct: 5  tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 64

                 
Query: 68 gctttcc 74
          |||||||
Sbjct: 65 gctttcc 71




>33109_bta-let-7a-2:mirbase
          Length = 72

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                      
Query: 8  tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 67
          |||||||| ||||||||||||| || |  ||| | | |||||| ||| ||| ||||||||
Sbjct: 5  tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 64

                 
Query: 68 gctttcc 74
          |||||||
Sbjct: 65 gctttcc 71




>32639_rno-let-7a-2:mirbase
          Length = 96

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctc 64
          ||||||||||| ||||||||||||| ||    ||| | | |||||| ||| ||| |||||
Sbjct: 14 ggctgaggtagtaggttgtatagtttagagttacaacaagggagataactgtacagcctc 73

                    
Query: 65 ctagctttcc 74
          ||||||||||
Sbjct: 74 ctagctttcc 83




>33098_rno-mir-3596a:mirbase
          Length = 114

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                      
Query: 5  ggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctc 64
          ||||||||||| ||||||||||||| ||    ||| | | |||||| ||| ||| |||||
Sbjct: 91 ggctgaggtagtaggttgtatagtttagagttacaacaagggagataactgtacagcctc 32

                    
Query: 65 ctagctttcc 74
          ||||||||||
Sbjct: 31 ctagctttcc 22




>38846_lgi-let-7:mirbase
          Length = 101

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 8  tgaggtaggaggttgtatagttgag 32
          |||||||| ||||||||||||||||
Sbjct: 21 tgaggtagtaggttgtatagttgag 45




>24642_bfl-let-7a-2:mirbase
          Length = 99

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 8  tgaggtaggaggttgtatagttgag 32
          |||||||| ||||||||||||||||
Sbjct: 21 tgaggtagtaggttgtatagttgag 45




>34166_dre-let-7a-2:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 5  ggctgaggtaggaggttgtatagtt 29
          ||||||||||| |||||||||||||
Sbjct: 8  ggctgaggtagtaggttgtatagtt 32




>34862_sko-let-7:mirbase
          Length = 101

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 8  tgaggtaggaggttgtatagttgag 32
          |||||||| ||||||||||||||||
Sbjct: 21 tgaggtagtaggttgtatagttgag 45




>34958_isc-let-7:mirbase
          Length = 100

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 8  tgaggtaggaggttgtatagttgag 32
          |||||||| ||||||||||||||||
Sbjct: 21 tgaggtagtaggttgtatagttgag 45




>38593_ppc-let-7:mirbase
          Length = 111

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 6  gctgaggtaggaggttgtatagtt 29
          |||||||||| |||||||||||||
Sbjct: 15 gctgaggtagtaggttgtatagtt 38




>34168_dre-let-7a-4:mirbase
          Length = 93

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 3  cgggctgaggtaggaggttgtatagtt 29
          |||| |||||||| |||||||||||||
Sbjct: 10 cgggatgaggtagtaggttgtatagtt 36