miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>27480_age-mir-16:mirbase
          Length = 89

 Score =  176 bits (89), Expect = 2e-45
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60

                                       
Query: 61 attaactgtgctgctgaagtaaggttgac 89
          |||||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttgac 89




>27589_sla-mir-16:mirbase
          Length = 89

 Score =  176 bits (89), Expect = 2e-45
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60

                                       
Query: 61 attaactgtgctgctgaagtaaggttgac 89
          |||||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttgac 89




>27652_mml-mir-16-1:mirbase
          Length = 89

 Score =  176 bits (89), Expect = 2e-45
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60

                                       
Query: 61 attaactgtgctgctgaagtaaggttgac 89
          |||||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttgac 89




>28260_ggo-mir-16:mirbase
          Length = 89

 Score =  176 bits (89), Expect = 2e-45
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60

                                       
Query: 61 attaactgtgctgctgaagtaaggttgac 89
          |||||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttgac 89




>28362_hsa-mir-16-1:mirbase
          Length = 89

 Score =  176 bits (89), Expect = 2e-45
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60

                                       
Query: 61 attaactgtgctgctgaagtaaggttgac 89
          |||||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttgac 89




>30044_ppa-mir-16:mirbase
          Length = 89

 Score =  176 bits (89), Expect = 2e-45
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60

                                       
Query: 61 attaactgtgctgctgaagtaaggttgac 89
          |||||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttgac 89




>30148_ptr-mir-16-1:mirbase
          Length = 89

 Score =  176 bits (89), Expect = 2e-45
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60

                                       
Query: 61 attaactgtgctgctgaagtaaggttgac 89
          |||||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttgac 89




>30753_ppy-mir-16:mirbase
          Length = 89

 Score =  176 bits (89), Expect = 2e-45
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60

                                       
Query: 61 attaactgtgctgctgaagtaaggttgac 89
          |||||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttgac 89




>27541_lla-mir-16:mirbase
          Length = 89

 Score =  165 bits (83), Expect = 7e-42
 Identities = 86/87 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
          ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1  gtcagcagtgccttagcagcacgtaaatattggcgctaagattctaaaattatctccagt 60

                                     
Query: 61 attaactgtgctgctgaagtaaggttg 87
          |||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttg 87




>33130_bta-mir-16a:mirbase
          Length = 89

 Score =  165 bits (83), Expect = 7e-42
 Identities = 86/87 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1  gtcagcagtgccttagcagcacgtaaatattggtgttaagattctaaaattatctccagt 60

                                     
Query: 61 attaactgtgctgctgaagtaaggttg 87
          |||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttg 87




>33914_ssc-mir-16-2:mirbase
          Length = 79

 Score =  157 bits (79), Expect = 2e-39
 Identities = 79/79 (100%)
 Strand = Plus / Plus

                                                                      
Query: 6  cagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaa 65
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  cagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaa 60

                             
Query: 66 ctgtgctgctgaagtaagg 84
          |||||||||||||||||||
Sbjct: 61 ctgtgctgctgaagtaagg 79




>27334_mdo-mir-16:mirbase
          Length = 90

 Score =  149 bits (75), Expect = 4e-37
 Identities = 84/87 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
          |||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 1  gtcaacagtgccttagcagcacgtaaatattggcgttaagattttaaaagtatctccagt 60

                                     
Query: 61 attaactgtgctgctgaagtaaggttg 87
          |||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttg 87




>31777_mmu-mir-16-1:mirbase
          Length = 93

 Score =  141 bits (71), Expect = 9e-35
 Identities = 83/87 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
          |||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 3  gtcagcggtgccttagcagcacgtaaatattggcgttaagattctgaaattacctccagt 62

                                     
Query: 61 attaactgtgctgctgaagtaaggttg 87
          ||| |||||||||||||||||||||||
Sbjct: 63 attgactgtgctgctgaagtaaggttg 89




>31428_oan-mir-16a:mirbase
          Length = 132

 Score =  137 bits (69), Expect = 1e-33
 Identities = 84/89 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
           ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 16  gtcagcagtaccttagcagcacgtaaatattggcgttaagactctaaaagtatctccagt 75

                                        
Query: 61  attaactgtgctgctgaagtaaggttgac 89
           ||| |||||||||||||||||||| ||||
Sbjct: 76  attgactgtgctgctgaagtaaggctgac 104




>26625_cfa-mir-16-1:mirbase
          Length = 65

 Score =  129 bits (65), Expect = 4e-31
 Identities = 65/65 (100%)
 Strand = Plus / Plus

                                                                      
Query: 14 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 73
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 60

               
Query: 74 ctgaa 78
          |||||
Sbjct: 61 ctgaa 65




>26948_eca-mir-16-2:mirbase
          Length = 63

 Score =  125 bits (63), Expect = 6e-30
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                      
Query: 14 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 73
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 60

             
Query: 74 ctg 76
          |||
Sbjct: 61 ctg 63




>31394_lca-mir-16:mirbase
          Length = 74

 Score =  111 bits (56), Expect = 8e-26
 Identities = 69/72 (95%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctc-cag 59
          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||
Sbjct: 1  gtcagcagtgccttagcagcacgtaaatattggtgttaagattctaaaattatctctaag 60

                      
Query: 60 tattaactgtgc 71
          ||||||||||||
Sbjct: 61 tattaactgtgc 72




>26399_tgu-mir-16a:mirbase
          Length = 92

 Score = 97.6 bits (49), Expect = 1e-21
 Identities = 67/72 (93%), Gaps = 2/72 (2%)
 Strand = Plus / Plus

                                                                      
Query: 13 ttagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgct 72
          ||||||||||||||||||||| ||||||| | ||||  ||||||||||||||||||||||
Sbjct: 10 ttagcagcacgtaaatattggtgttaagactgtaaa--tatctccagtattaactgtgct 67

                      
Query: 73 gctgaagtaagg 84
          ||||||||||||
Sbjct: 68 gctgaagtaagg 79




>25894_gga-mir-16-1:mirbase
          Length = 84

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 65/71 (91%), Gaps = 2/71 (2%)
 Strand = Plus / Plus

                                                                      
Query: 14 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 73
          |||||||||||||||||||| ||||| | | ||||  |||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 71

                     
Query: 74 ctgaagtaagg 84
          |||||||||||
Sbjct: 72 ctgaagtaagg 82




>25700_xtr-mir-16a:mirbase
          Length = 82

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 3  cagcagtgccttagcagcacgtaaatattggcgttaa 39
          ||||||| | ||||||||||||||||||||| |||||
Sbjct: 3  cagcagtcctttagcagcacgtaaatattggtgttaa 39



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 60 tattaactgtgctgctgaagtaaggttg 87
          ||||||||||||||||  ||||||||||
Sbjct: 51 tattaactgtgctgctagagtaaggttg 78




>26626_cfa-mir-16-2:mirbase
          Length = 65

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 14 tagcagcacgtaaatattggcgt 36
          |||||||||||||||||||||||
Sbjct: 1  tagcagcacgtaaatattggcgt 23




>26947_eca-mir-16:mirbase
          Length = 81

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 14 tagcagcacgtaaatattggcgt 36
          |||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggcgt 32




>27653_mml-mir-16-2:mirbase
          Length = 81

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 14 tagcagcacgtaaatattggcgt 36
          |||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggcgt 32




>28363_hsa-mir-16-2:mirbase
          Length = 81

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 14 tagcagcacgtaaatattggcgt 36
          |||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggcgt 32




>30149_ptr-mir-16-2:mirbase
          Length = 80

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 14 tagcagcacgtaaatattggcgt 36
          |||||||||||||||||||||||
Sbjct: 9  tagcagcacgtaaatattggcgt 31




>31778_mmu-mir-16-2:mirbase
          Length = 95

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 14 tagcagcacgtaaatattggcgt 36
          |||||||||||||||||||||||
Sbjct: 17 tagcagcacgtaaatattggcgt 39




>32659_rno-mir-16:mirbase
          Length = 95

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 14 tagcagcacgtaaatattggcgt 36
          |||||||||||||||||||||||
Sbjct: 17 tagcagcacgtaaatattggcgt 39




>33131_bta-mir-16b:mirbase
          Length = 93

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 14 tagcagcacgtaaatattggcgt 36
          |||||||||||||||||||||||
Sbjct: 17 tagcagcacgtaaatattggcgt 39




>33913_ssc-mir-16-1:mirbase
          Length = 77

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 14 tagcagcacgtaaatattggcgt 36
          |||||||||||||||||||||||
Sbjct: 8  tagcagcacgtaaatattggcgt 30




>34547_fru-mir-16:mirbase
          Length = 89

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 14 tagcagcacgtaaatattggcgttaag 40
          |||||||||||||||||||| ||||||
Sbjct: 13 tagcagcacgtaaatattggagttaag 39




>34695_tni-mir-16:mirbase
          Length = 72

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 14 tagcagcacgtaaatattggcgttaag 40
          |||||||||||||||||||| ||||||
Sbjct: 1  tagcagcacgtaaatattggagttaag 27




>25701_xtr-mir-16b:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 ttagcagcacgtaaatattgg 33
          |||||||||||||||||||||
Sbjct: 13 ttagcagcacgtaaatattgg 33




>34206_dre-mir-16a:mirbase
          Length = 87

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 ttagcagcacgtaaatattgg 33
          |||||||||||||||||||||
Sbjct: 12 ttagcagcacgtaaatattgg 32




>25429_pma-mir-16:mirbase
          Length = 75

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 14 tagcagcacgtaaatattgg 33
          ||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29




>25895_gga-mir-16-2:mirbase
          Length = 94

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 14 tagcagcacgtaaatattgg 33
          ||||||||||||||||||||
Sbjct: 17 tagcagcacgtaaatattgg 36




>26400_tgu-mir-16b:mirbase
          Length = 72

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 14 tagcagcacgtaaatattgg 33
          ||||||||||||||||||||
Sbjct: 11 tagcagcacgtaaatattgg 30




>30754_ppy-mir-16-2:mirbase
          Length = 82

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 14 tagcagcacgtaaatattgg 33
          ||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29




>31429_oan-mir-16b:mirbase
          Length = 101

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 14 tagcagcacgtaaatattgg 33
          ||||||||||||||||||||
Sbjct: 21 tagcagcacgtaaatattgg 40




>34207_dre-mir-16b:mirbase
          Length = 140

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 14 tagcagcacgtaaatattgg 33
          ||||||||||||||||||||
Sbjct: 39 tagcagcacgtaaatattgg 58