miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>27668_mml-mir-24-2:mirbase
          Length = 73

 Score =  145 bits (73), Expect = 5e-36
 Identities = 73/73 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60

                       
Query: 61 agcaggaacagga 73
          |||||||||||||
Sbjct: 61 agcaggaacagga 73




>28270_ggo-mir-24:mirbase
          Length = 73

 Score =  135 bits (68), Expect = 5e-33
 Identities = 71/72 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
          |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1  ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60

                      
Query: 61 agcaggaacagg 72
          ||||||||||||
Sbjct: 61 agcaggaacagg 72




>28378_hsa-mir-24-2:mirbase
          Length = 73

 Score =  135 bits (68), Expect = 5e-33
 Identities = 71/72 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
          |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1  ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60

                      
Query: 61 agcaggaacagg 72
          ||||||||||||
Sbjct: 61 agcaggaacagg 72




>30057_ppa-mir-24-2:mirbase
          Length = 73

 Score =  135 bits (68), Expect = 5e-33
 Identities = 71/72 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
          |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1  ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60

                      
Query: 61 agcaggaacagg 72
          ||||||||||||
Sbjct: 61 agcaggaacagg 72




>30164_ptr-mir-24-2:mirbase
          Length = 73

 Score =  135 bits (68), Expect = 5e-33
 Identities = 71/72 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
          |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1  ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60

                      
Query: 61 agcaggaacagg 72
          ||||||||||||
Sbjct: 61 agcaggaacagg 72




>30769_ppy-mir-24-2:mirbase
          Length = 73

 Score =  135 bits (68), Expect = 5e-33
 Identities = 71/72 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
          |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1  ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgtacactggctcagttc 60

                      
Query: 61 agcaggaacagg 72
          ||||||||||||
Sbjct: 61 agcaggaacagg 72




>33148_bta-mir-24-2:mirbase
          Length = 72

 Score =  135 bits (68), Expect = 5e-33
 Identities = 71/72 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
          ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1  ctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcacactggctcagttc 60

                      
Query: 61 agcaggaacagg 72
          ||||||||||||
Sbjct: 61 agcaggaacagg 72




>33928_ssc-mir-24-1:mirbase
          Length = 72

 Score =  127 bits (64), Expect = 1e-30
 Identities = 70/72 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctctgcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttc 60
          ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 1  ctctgcctcccgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttc 60

                      
Query: 61 agcaggaacagg 72
          ||||||||||||
Sbjct: 61 agcaggaacagg 72




>26961_eca-mir-24:mirbase
          Length = 68

 Score =  125 bits (63), Expect = 4e-30
 Identities = 66/67 (98%)
 Strand = Plus / Plus

                                                                      
Query: 7  ctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttcagcagg 66
          |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1  ctcccgtgcctactgagctgaaacacagttggtttgtgcagactggctcagttcagcagg 60

                 
Query: 67 aacagga 73
          |||||||
Sbjct: 61 aacagga 67




>26640_cfa-mir-24-2:mirbase
          Length = 62

 Score =  107 bits (54), Expect = 1e-24
 Identities = 60/62 (96%)
 Strand = Plus / Plus

                                                                      
Query: 11 cgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttcagcaggaaca 70
          ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 1  cgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaaca 60

            
Query: 71 gg 72
          ||
Sbjct: 61 gg 62




>27346_mdo-mir-24-2:mirbase
          Length = 73

 Score = 89.7 bits (45), Expect = 2e-19
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                      
Query: 5  gcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttcagca 64
          |||||| |||||||||||||||||||||||||| ||||   | |||||||||||||||||
Sbjct: 1  gcctcctgtgcctactgagctgaaacacagttgctttggataaactggctcagttcagca 60

                   
Query: 65 ggaacagga 73
          |||||||||
Sbjct: 61 ggaacagga 69




>31792_mmu-mir-24-2:mirbase
          Length = 107

 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 61/69 (88%), Gaps = 2/69 (2%)
 Strand = Plus / Plus

                                                                      
Query: 5  gcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttcagca 64
          ||||||||||||||||||||||||  ||||||| ||   |  ||||||||||||||||||
Sbjct: 18 gcctcccgtgcctactgagctgaa--acagttgattccagtgcactggctcagttcagca 75

                   
Query: 65 ggaacagga 73
          |||||||||
Sbjct: 76 ggaacagga 84




>32513_mmu-mir-3074-2:mirbase
          Length = 83

 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 61/69 (88%), Gaps = 2/69 (2%)
 Strand = Plus / Minus

                                                                      
Query: 5  gcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttcagca 64
          |||||||||||||||||||||||||||  |||| ||   |  ||||||||||||||||||
Sbjct: 76 gcctcccgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagca 19

                   
Query: 65 ggaacagga 73
          |||||||||
Sbjct: 18 ggaacagga 10




>32514_mmu-mir-3074-2:mirbase
          Length = 83

 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 61/69 (88%), Gaps = 2/69 (2%)
 Strand = Plus / Minus

                                                                      
Query: 5  gcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttcagca 64
          |||||||||||||||||||||||||||  |||| ||   |  ||||||||||||||||||
Sbjct: 76 gcctcccgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagca 19

                   
Query: 65 ggaacagga 73
          |||||||||
Sbjct: 18 ggaacagga 10




>32676_rno-mir-24-2:mirbase
          Length = 108

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 60/69 (86%), Gaps = 2/69 (2%)
 Strand = Plus / Plus

                                                                      
Query: 5  gcctcccgtgcctactgagctgaaacacagttggtttgtgcacactggctcagttcagca 64
          |||||| ||||||||||||||||||||  |||| ||   |  ||||||||||||||||||
Sbjct: 18 gcctcctgtgcctactgagctgaaaca--gttgattccagtgcactggctcagttcagca 75

                   
Query: 65 ggaacagga 73
          |||||||||
Sbjct: 76 ggaacagga 84




>25716_xtr-mir-24a:mirbase
          Length = 67

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 cacactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||||
Sbjct: 38 cacactggctcagttcagcaggaacagga 66




>25717_xtr-mir-24a:mirbase
          Length = 67

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 cacactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||||
Sbjct: 38 cacactggctcagttcagcaggaacagga 66




>26413_tgu-mir-24:mirbase
          Length = 132

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 45  cacactggctcagttcagcaggaacagga 73
           |||||||||||||||||||||||||||||
Sbjct: 96  cacactggctcagttcagcaggaacagga 124




>26639_cfa-mir-24-1:mirbase
          Length = 62

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 40 ttgtgcacactggctcagttcagcaggaacagg 72
          |||| ||||||||||||||||||||||||||||
Sbjct: 30 ttgtacacactggctcagttcagcaggaacagg 62




>26962_eca-mir-24-2:mirbase
          Length = 68

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 cacactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacagga 67




>27667_mml-mir-24-1:mirbase
          Length = 68

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 cacactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacagga 67




>28183_mne-mir-24-1:mirbase
          Length = 68

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 cacactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacagga 67




>28377_hsa-mir-24-1:mirbase
          Length = 68

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 cacactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacagga 67




>29230_hsa-mir-3074:mirbase
          Length = 81

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                       
Query: 45 cacactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||||
Sbjct: 36 cacactggctcagttcagcaggaacagga 8




>29231_hsa-mir-3074:mirbase
          Length = 81

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                       
Query: 45 cacactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||||
Sbjct: 36 cacactggctcagttcagcaggaacagga 8




>30056_ppa-mir-24-1:mirbase
          Length = 68

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 cacactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacagga 67




>30163_ptr-mir-24-1:mirbase
          Length = 67

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 cacactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||||
Sbjct: 38 cacactggctcagttcagcaggaacagga 66




>30768_ppy-mir-24-1:mirbase
          Length = 68

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 cacactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacagga 67




>31791_mmu-mir-24-1:mirbase
          Length = 68

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 cacactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacagga 67




>32511_mmu-mir-3074-1:mirbase
          Length = 85

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                       
Query: 45 cacactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||||
Sbjct: 38 cacactggctcagttcagcaggaacagga 10




>32512_mmu-mir-3074-1:mirbase
          Length = 85

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                       
Query: 45 cacactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||||
Sbjct: 38 cacactggctcagttcagcaggaacagga 10




>32675_rno-mir-24-1:mirbase
          Length = 68

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 cacactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacagga 67




>33024_rno-mir-3074:mirbase
          Length = 117

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                       
Query: 45 cacactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||||
Sbjct: 51 cacactggctcagttcagcaggaacagga 23




>33147_bta-mir-24-1:mirbase
          Length = 68

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 cacactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||||
Sbjct: 39 cacactggctcagttcagcaggaacagga 67




>33929_ssc-mir-24-2:mirbase
          Length = 80

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 cacactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||||
Sbjct: 47 cacactggctcagttcagcaggaacagga 75




>34230_dre-mir-24-3:mirbase
          Length = 142

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 46  acactggctcagttcagcaggaacagga 73
           ||||||||||||||||||||||||||||
Sbjct: 76  acactggctcagttcagcaggaacagga 103



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 5  gcctcccgtgcctactgagctga 27
          |||||||||||||||||||||||
Sbjct: 37 gcctcccgtgcctactgagctga 59




>31442_oan-mir-24:mirbase
          Length = 84

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 47 cactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||
Sbjct: 49 cactggctcagttcagcaggaacagga 75




>34228_dre-mir-24-1:mirbase
          Length = 80

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 47 cactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||
Sbjct: 46 cactggctcagttcagcaggaacagga 72




>34709_tni-mir-24-1:mirbase
          Length = 70

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 47 cactggctcagttcagcaggaacagga 73
          |||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacagga 67




>25908_gga-mir-24:mirbase
          Length = 68

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 48 actggctcagttcagcaggaacagga 73
          ||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacagga 67




>34561_fru-mir-24-1:mirbase
          Length = 79

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 48 actggctcagttcagcaggaacagga 73
          ||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacagga 77




>34562_fru-mir-24-1:mirbase
          Length = 79

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 48 actggctcagttcagcaggaacagga 73
          ||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacagga 77




>25444_pma-mir-24:mirbase
          Length = 94

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 47 cactggctcagttcagcaggaacag 71
          |||||||||||||||||||||||||
Sbjct: 55 cactggctcagttcagcaggaacag 79




>34229_dre-mir-24-2:mirbase
          Length = 82

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 48 actggctcagttcagcaggaacagg 72
          |||||||||||||||||||||||||
Sbjct: 49 actggctcagttcagcaggaacagg 73




>34231_dre-mir-24-4:mirbase
          Length = 90

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 49 ctggctcagttcagcaggaacagg 72
          ||||||||||||||||||||||||
Sbjct: 55 ctggctcagttcagcaggaacagg 78




>34563_fru-mir-24-2:mirbase
          Length = 82

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 49 ctggctcagttcagcaggaacagg 72
          ||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73




>34710_tni-mir-24-2:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 49 ctggctcagttcagcaggaacagg 72
          ||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73




>27345_mdo-mir-24-1:mirbase
          Length = 57

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 45 cacactggctcagttcagcagga 67
          |||||||||||||||||||||||
Sbjct: 35 cacactggctcagttcagcagga 57




>25660_xla-mir-24b:mirbase
          Length = 68

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 49 ctggctcagttcagcagga 67
          |||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62




>25718_xtr-mir-24b:mirbase
          Length = 68

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 49 ctggctcagttcagcagga 67
          |||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62